STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yafZUPF0380 protein YafZ; CP4-6 prophage; putative DNA-binding transcriptional regulator;Phage or Prophage Related; Belongs to the UPF0380 family. (273 aa)    
Predicted Functional Partners:
ykfF
CP4-6 prophage; uncharacterized protein; Belongs to the UPF0401 family.
   
  
 0.935
yfjI
CP4-57 prophage; uncharacterized protein.
 
  
 0.908
ykfA
CP4-6 prophage; Putative GTP-binding protein; To E.coli YfjP and YeeP.
 
    0.801
yhbX
Putative EptAB family phosphoethanolamine transferase, inner membrane protein; Probably does not transfer phosphoethanolamine to lipid A. Belongs to the phosphoethanolamine transferase family.
      
 0.644
yafW
CP4-6 prophage; Antitoxin component of a type IV toxin-antitoxin (TA) system. Antitoxin that counteracts the effect of cognate toxin YkfI. It does not seem to bind to the cognate toxin but instead induces toxin loss by an unknown mechanism. Co-overexpression of toxin YkfI and antitoxin YafW leads to formation of elongated cells.
  
    0.634
yafX
CP4-6 prophage; uncharacterized protein; Belongs to the antirestriction protein family.
  
    0.632
yeeT
CP4-44 prophage; uncharacterized protein; Belongs to the YeeT/YkfH/YpjJ family.
  
  
 0.564
yeeR
CP4-44 prophage; putative membrane protein.
   
  
 0.546
perR
CP4-6 prophage; Apparent regulatory gene involved in peroxide resistance in stationary phase; Belongs to the LysR transcriptional regulatory family.
 
    0.544
yeeS
CP4-44 prophage; Putative DNA repair protein, RADC family; Belongs to the UPF0758 family.
   
  
 0.538
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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