Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
allR | ykgH | b0506 | b0310 | Glyoxylate-inducible transcriptional repressor of all and gcl operons; Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS-allA intergenic region. Binding to DNA is abolished by glyoxylate. | Putative inner membrane protein. | 0.459 |
betA | betB | b0311 | b0312 | Choline dehydrogenase, a flavoprotein; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. Belongs to the GMC oxidoreductase family. | Betaine aldehyde dehydrogenase, NAD-dependent; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. It is highly specific for betaine and has a significantly higher affinity for NAD than for NADP. | 0.999 |
betA | ykgH | b0311 | b0310 | Choline dehydrogenase, a flavoprotein; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. Belongs to the GMC oxidoreductase family. | Putative inner membrane protein. | 0.438 |
betB | betA | b0312 | b0311 | Betaine aldehyde dehydrogenase, NAD-dependent; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. It is highly specific for betaine and has a significantly higher affinity for NAD than for NADP. | Choline dehydrogenase, a flavoprotein; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. Belongs to the GMC oxidoreductase family. | 0.999 |
betB | ykgH | b0312 | b0310 | Betaine aldehyde dehydrogenase, NAD-dependent; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. It is highly specific for betaine and has a significantly higher affinity for NAD than for NADP. | Putative inner membrane protein. | 0.428 |
kilR | ykgH | b1352 | b0310 | Killing protein, Rac prophage; Causes inhibition of cell division. At high levels of expression, can also abolish the rod shape of the cells. Division inhibition by KilR can be relieved by overexpression of the cell division protein FtsZ. | Putative inner membrane protein. | 0.525 |
rclB | ybiJ | b0303 | b0802 | Reactive chlorine species (RCS) stress resistance periplasmic protein; Probably involved in reactive chlorine species (RCS) stress resistance; Belongs to the BhsA/McbA family. | DUF1471 family putative periplasmic protein. | 0.491 |
rclB | ykgH | b0303 | b0310 | Reactive chlorine species (RCS) stress resistance periplasmic protein; Probably involved in reactive chlorine species (RCS) stress resistance; Belongs to the BhsA/McbA family. | Putative inner membrane protein. | 0.540 |
ybiJ | rclB | b0802 | b0303 | DUF1471 family putative periplasmic protein. | Reactive chlorine species (RCS) stress resistance periplasmic protein; Probably involved in reactive chlorine species (RCS) stress resistance; Belongs to the BhsA/McbA family. | 0.491 |
ybiJ | ykgH | b0802 | b0310 | DUF1471 family putative periplasmic protein. | Putative inner membrane protein. | 0.529 |
yccE | yfdF | b1001 | b2345 | Uncharacterized protein. | Protein involved in DNA metabolic process. | 0.667 |
yccE | yjgL | b1001 | b4253 | Uncharacterized protein. | SopA-central-domain-like hexapeptide repeat protein. | 0.541 |
yccE | yjgN | b1001 | b4257 | Uncharacterized protein. | DUF898 family inner membrane protein. | 0.479 |
yccE | ykgH | b1001 | b0310 | Uncharacterized protein. | Putative inner membrane protein. | 0.600 |
yfdF | yccE | b2345 | b1001 | Protein involved in DNA metabolic process. | Uncharacterized protein. | 0.667 |
yfdF | yjgL | b2345 | b4253 | Protein involved in DNA metabolic process. | SopA-central-domain-like hexapeptide repeat protein. | 0.856 |
yfdF | yjgN | b2345 | b4257 | Protein involved in DNA metabolic process. | DUF898 family inner membrane protein. | 0.782 |
yfdF | ykgH | b2345 | b0310 | Protein involved in DNA metabolic process. | Putative inner membrane protein. | 0.810 |
yjgL | yccE | b4253 | b1001 | SopA-central-domain-like hexapeptide repeat protein. | Uncharacterized protein. | 0.541 |
yjgL | yfdF | b4253 | b2345 | SopA-central-domain-like hexapeptide repeat protein. | Protein involved in DNA metabolic process. | 0.856 |
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