Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aroL | aroM | b0388 | b0390 | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | AroM family protein; This protein of unknown function is encoded by a gene that cotranscribes with the aroL gene, which codes for shikimate kinase II. | 0.894 |
aroL | yaiA | b0388 | b0389 | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | OxyR-regulated conserved protein. | 0.659 |
aroM | aroL | b0390 | b0388 | AroM family protein; This protein of unknown function is encoded by a gene that cotranscribes with the aroL gene, which codes for shikimate kinase II. | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | 0.894 |
aroM | yaiA | b0390 | b0389 | AroM family protein; This protein of unknown function is encoded by a gene that cotranscribes with the aroL gene, which codes for shikimate kinase II. | OxyR-regulated conserved protein. | 0.660 |
yaeH | yaiA | b0163 | b0389 | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | OxyR-regulated conserved protein. | 0.627 |
yaeH | ybjC | b0163 | b0850 | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | DUF1418 family protein. | 0.529 |
yaeH | ydcH | b0163 | b1426 | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | DUF465 family protein. | 0.813 |
yaeH | ytfK | b0163 | b4217 | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | DUF1107 family protein. | 0.560 |
yahC | yaiA | b0317 | b0389 | Putative inner membrane protein. | OxyR-regulated conserved protein. | 0.810 |
yaiA | aroL | b0389 | b0388 | OxyR-regulated conserved protein. | Shikimate kinase II; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate. Belongs to the shikimate kinase family. AroL subfamily. | 0.659 |
yaiA | aroM | b0389 | b0390 | OxyR-regulated conserved protein. | AroM family protein; This protein of unknown function is encoded by a gene that cotranscribes with the aroL gene, which codes for shikimate kinase II. | 0.660 |
yaiA | yaeH | b0389 | b0163 | OxyR-regulated conserved protein. | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | 0.627 |
yaiA | yahC | b0389 | b0317 | OxyR-regulated conserved protein. | Putative inner membrane protein. | 0.810 |
yaiA | ybjC | b0389 | b0850 | OxyR-regulated conserved protein. | DUF1418 family protein. | 0.493 |
yaiA | ydcH | b0389 | b1426 | OxyR-regulated conserved protein. | DUF465 family protein. | 0.506 |
yaiA | ydiZ | b0389 | b1724 | OxyR-regulated conserved protein. | Uncharacterized protein. | 0.407 |
yaiA | ygcG | b0389 | b2778 | OxyR-regulated conserved protein. | TPM domain protein, putative phosphatase. | 0.600 |
yaiA | ytfK | b0389 | b4217 | OxyR-regulated conserved protein. | DUF1107 family protein. | 0.518 |
ybjC | yaeH | b0850 | b0163 | DUF1418 family protein. | UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family. | 0.529 |
ybjC | yaiA | b0850 | b0389 | DUF1418 family protein. | OxyR-regulated conserved protein. | 0.493 |
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