STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaADUF1428 family protein. (117 aa)    
Predicted Functional Partners:
yegP
UPF0339 family protein; Belongs to the UPF0339 family. Duplicated subfamily.
   
  
 0.756
yohC
Yip1 family inner membrane protein.
   
  
 0.647
ychA
Transglutaminase-like TPR-repeat protein; Protein involved in regulation of transcription, DNA-dependent; Belongs to the UPF0162 family.
      
 0.595
ybaT
Putative amino acid transporter; Probable amino-acid or metabolite transport protein; Belongs to the amino acid-polyamine-organocation (APC) superfamily.
   
  
 0.533
yjbJ
Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
  
  
 0.533
ymdF
KGG family protein; Belongs to the con-10 family.
      
 0.529
yhjG
Putative inner membrane-anchored periplasmic AsmA family protein.
   
    0.514
mcbA
Colanic acid mucoidy stimulation protein; Affects biofilm formation and mucoidy.
   
  
 0.509
ycgB
SpoVR family stationary phase protein; To B.subtilis SpoVR.
   
  
 0.475
yhiM
Inner membrane protein YhiM; Pseudogene, DUF4049 family protein.
   
  
 0.457
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.