Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dtpD | ybgI | b0709 | b0710 | Dipeptide and tripeptide permease D; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily. | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | 0.434 |
| dtpD | ybgJ | b0709 | b0711 | Dipeptide and tripeptide permease D; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily. | Putative allophanate hydrolase, subunit 1; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the PxpB family. | 0.400 |
| dtpD | ybgK | b0709 | b0712 | Dipeptide and tripeptide permease D; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily. | Putative allophanate hydrolase, subunit 2; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the PxpC family. | 0.400 |
| dtpD | ybgL | b0709 | b0713 | Dipeptide and tripeptide permease D; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily. | UPF0271 family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the LamB/PxpA family. | 0.400 |
| nei | ybgI | b0714 | b0710 | Endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Acts on DNA bubble and 3'-fork structures, suggesting a role in replication- associated DNA repair. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a sing [...] | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | 0.806 |
| nei | ybgJ | b0714 | b0711 | Endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Acts on DNA bubble and 3'-fork structures, suggesting a role in replication- associated DNA repair. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a sing [...] | Putative allophanate hydrolase, subunit 1; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the PxpB family. | 0.951 |
| nei | ybgK | b0714 | b0712 | Endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Acts on DNA bubble and 3'-fork structures, suggesting a role in replication- associated DNA repair. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a sing [...] | Putative allophanate hydrolase, subunit 2; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the PxpC family. | 0.953 |
| nei | ybgL | b0714 | b0713 | Endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Acts on DNA bubble and 3'-fork structures, suggesting a role in replication- associated DNA repair. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a sing [...] | UPF0271 family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the LamB/PxpA family. | 0.965 |
| nlpI | ybgI | b3163 | b0710 | Lipoprotein involved in osmotic sensitivity and filamentation; May be involved in cell division. May play a role in bacterial septation or regulation of cell wall degradation during cell division. Negatively controls the production of extracellular DNA (eDNA). | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | 0.535 |
| sspB | ybgI | b3228 | b0710 | ClpXP protease specificity enhancing factor; Enhances recognition of ssrA-tagged proteins by the ClpX-ClpP protease; the ssrA degradation tag (AANDENYALAA) is added trans- translationally to proteins that are stalled on the ribosome, freeing the ribosome and targeting stalled peptides for degradation. SspB activates the ATPase activity of ClpX. Seems to act in concert with SspA in the regulation of several proteins during exponential and stationary-phase growth. | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | 0.416 |
| yacG | ybgI | b0101 | b0710 | DNA gyrase inhibitor; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | 0.525 |
| ybgI | dtpD | b0710 | b0709 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | Dipeptide and tripeptide permease D; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily. | 0.434 |
| ybgI | nei | b0710 | b0714 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | Endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Acts on DNA bubble and 3'-fork structures, suggesting a role in replication- associated DNA repair. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a sing [...] | 0.806 |
| ybgI | nlpI | b0710 | b3163 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | Lipoprotein involved in osmotic sensitivity and filamentation; May be involved in cell division. May play a role in bacterial septation or regulation of cell wall degradation during cell division. Negatively controls the production of extracellular DNA (eDNA). | 0.535 |
| ybgI | sspB | b0710 | b3228 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | ClpXP protease specificity enhancing factor; Enhances recognition of ssrA-tagged proteins by the ClpX-ClpP protease; the ssrA degradation tag (AANDENYALAA) is added trans- translationally to proteins that are stalled on the ribosome, freeing the ribosome and targeting stalled peptides for degradation. SspB activates the ATPase activity of ClpX. Seems to act in concert with SspA in the regulation of several proteins during exponential and stationary-phase growth. | 0.416 |
| ybgI | yacG | b0710 | b0101 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | DNA gyrase inhibitor; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.525 |
| ybgI | ybgJ | b0710 | b0711 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | Putative allophanate hydrolase, subunit 1; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the PxpB family. | 0.992 |
| ybgI | ybgK | b0710 | b0712 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | Putative allophanate hydrolase, subunit 2; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the PxpC family. | 0.985 |
| ybgI | ybgL | b0710 | b0713 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | UPF0271 family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. Belongs to the LamB/PxpA family. | 0.982 |
| ybgI | ygbN | b0710 | b2740 | NIF3 family metal-binding protein; Provides significant protection from radiation damage and may be involved in the degradation of radiation-damaged nucleotides. | Putative transport protein. | 0.505 |
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