STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gfcAO-antigen capsule production threonine-rich inner membrane protein. (101 aa)    
Predicted Functional Partners:
gfcB
O-antigen capsule production lipoprotein; Putative regulator.
  
  
 0.959
gfcC
Putative O-antigen capsule production periplasmic protein; To E.coli YjbG.
  
  
 0.954
gfcD
Putative O-antigen capsule production periplasmic protein.
  
  
 0.946
gfcE
Putative O-antigen capsule outer membrane auxillary protein export channel; May be involved in polysaccharide transport; Belongs to the BexD/CtrA/VexA family.
  
  
 0.889
etp
O-antigen capsule forming protein-tyrosine-phosphatase; Dephosphorylates etk; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.888
etk
Tyrosine-protein kinase, role in O-antigen capsule formation; Protein involved in protein modification process; Belongs to the etk/wzc family.
  
  
 0.882
ymfI
E14 prophage; uncharacterized protein.
      
 0.621
ytfI
Uncharacterized protein.
      
 0.600
insB1-4
IS1 transposase B; Absolutely required for transposition of IS1.
       0.549
insA-7
IS1 repressor TnpA.
       0.549
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.