Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
msyB | ycaC | b1051 | b0897 | Multicopy suppressor of secY and secA; Could participate in the normal pathway of protein export. | Putative isochorismatase family hydrolase; Protein involved in cellular amino acid catabolic process. | 0.859 |
msyB | yceK | b1051 | b1050 | Multicopy suppressor of secY and secA; Could participate in the normal pathway of protein export. | Outer membrane integrity lipoprotein; To E.coli YidQ. | 0.703 |
msyB | ydiZ | b1051 | b1724 | Multicopy suppressor of secY and secA; Could participate in the normal pathway of protein export. | Uncharacterized protein. | 0.869 |
opgG | opgH | b1048 | b1049 | OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family. | OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). | 0.998 |
opgG | yceK | b1048 | b1050 | OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family. | Outer membrane integrity lipoprotein; To E.coli YidQ. | 0.490 |
opgH | opgG | b1049 | b1048 | OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). | OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family. | 0.998 |
opgH | yceK | b1049 | b1050 | OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). | Outer membrane integrity lipoprotein; To E.coli YidQ. | 0.492 |
yajI | ybjM | b0412 | b0848 | Putative lipoprotein. | Inner membrane protein. | 0.529 |
yajI | yceK | b0412 | b1050 | Putative lipoprotein. | Outer membrane integrity lipoprotein; To E.coli YidQ. | 0.543 |
ybjM | yajI | b0848 | b0412 | Inner membrane protein. | Putative lipoprotein. | 0.529 |
ybjM | yceK | b0848 | b1050 | Inner membrane protein. | Outer membrane integrity lipoprotein; To E.coli YidQ. | 0.533 |
ycaC | msyB | b0897 | b1051 | Putative isochorismatase family hydrolase; Protein involved in cellular amino acid catabolic process. | Multicopy suppressor of secY and secA; Could participate in the normal pathway of protein export. | 0.859 |
ycaC | yceK | b0897 | b1050 | Putative isochorismatase family hydrolase; Protein involved in cellular amino acid catabolic process. | Outer membrane integrity lipoprotein; To E.coli YidQ. | 0.420 |
ycaC | ydiZ | b0897 | b1724 | Putative isochorismatase family hydrolase; Protein involved in cellular amino acid catabolic process. | Uncharacterized protein. | 0.833 |
yceK | msyB | b1050 | b1051 | Outer membrane integrity lipoprotein; To E.coli YidQ. | Multicopy suppressor of secY and secA; Could participate in the normal pathway of protein export. | 0.703 |
yceK | opgG | b1050 | b1048 | Outer membrane integrity lipoprotein; To E.coli YidQ. | OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family. | 0.490 |
yceK | opgH | b1050 | b1049 | Outer membrane integrity lipoprotein; To E.coli YidQ. | OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). | 0.492 |
yceK | yajI | b1050 | b0412 | Outer membrane integrity lipoprotein; To E.coli YidQ. | Putative lipoprotein. | 0.543 |
yceK | ybjM | b1050 | b0848 | Outer membrane integrity lipoprotein; To E.coli YidQ. | Inner membrane protein. | 0.533 |
yceK | ycaC | b1050 | b0897 | Outer membrane integrity lipoprotein; To E.coli YidQ. | Putative isochorismatase family hydrolase; Protein involved in cellular amino acid catabolic process. | 0.420 |
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