STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ymfDE14 prophage; putative SAM-dependent methyltransferase. (221 aa)    
Predicted Functional Partners:
ymfE
E14 prophage; putative inner membrane protein.
  
  
 0.976
intE
E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome.
   
  
 0.858
ydaF
Uncharacterized protein, Rac prophage; To E.coli YdfA.
      
 0.811
yafE
Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative biotin synthesis protein; Protein involved in biotin biosynthetic process; Belongs to the methyltransferase superfamily.
    
 
 0.748
lit
T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family.
   
    0.745
ycgX
DUF1398 family protein; To E.coli YbcV and YdfO.
   
  
 0.737
xisE
E14 prophage; putative excisionase; To lambdoid phages excisionases.
   
  
 0.729
ymfI
E14 prophage; uncharacterized protein.
   
  
 0.724
croE
E14 prophage; putative DNA-binding transcriptional regulator.
   
  
 0.664
yjhP
Uncharacterized protein YjhP; Pseudogene, zinc finger protein family.
  
  
 0.658
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.