Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
lit | ymfD | b1139 | b1137 | T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. | E14 prophage; putative SAM-dependent methyltransferase. | 0.745 |
lit | ymfE | b1139 | b1138 | T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. | E14 prophage; putative inner membrane protein. | 0.743 |
lit | ymfI | b1139 | b1143 | T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. | E14 prophage; uncharacterized protein. | 0.751 |
racR | ydaS | b1356 | b1357 | Rac prophage; Repressor protein for rac prophage. | Rac prophage; putative DNA-binding transcriptional regulator. | 0.963 |
racR | ymfE | b1356 | b1138 | Rac prophage; Repressor protein for rac prophage. | E14 prophage; putative inner membrane protein. | 0.522 |
racR | ymiB | b1356 | b4672 | Rac prophage; Repressor protein for rac prophage. | Uncharacterized protein. | 0.621 |
ydaS | racR | b1357 | b1356 | Rac prophage; putative DNA-binding transcriptional regulator. | Rac prophage; Repressor protein for rac prophage. | 0.963 |
ydaS | ymfD | b1357 | b1137 | Rac prophage; putative DNA-binding transcriptional regulator. | E14 prophage; putative SAM-dependent methyltransferase. | 0.645 |
ydaS | ymfE | b1357 | b1138 | Rac prophage; putative DNA-binding transcriptional regulator. | E14 prophage; putative inner membrane protein. | 0.489 |
ydaS | ymiB | b1357 | b4672 | Rac prophage; putative DNA-binding transcriptional regulator. | Uncharacterized protein. | 0.541 |
ymfD | lit | b1137 | b1139 | E14 prophage; putative SAM-dependent methyltransferase. | T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. | 0.745 |
ymfD | ydaS | b1137 | b1357 | E14 prophage; putative SAM-dependent methyltransferase. | Rac prophage; putative DNA-binding transcriptional regulator. | 0.645 |
ymfD | ymfE | b1137 | b1138 | E14 prophage; putative SAM-dependent methyltransferase. | E14 prophage; putative inner membrane protein. | 0.976 |
ymfD | ymfI | b1137 | b1143 | E14 prophage; putative SAM-dependent methyltransferase. | E14 prophage; uncharacterized protein. | 0.724 |
ymfD | ymfJ | b1137 | b1144 | E14 prophage; putative SAM-dependent methyltransferase. | E14 prophage; uncharacterized protein. | 0.644 |
ymfE | lit | b1138 | b1139 | E14 prophage; putative inner membrane protein. | T4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. | 0.743 |
ymfE | racR | b1138 | b1356 | E14 prophage; putative inner membrane protein. | Rac prophage; Repressor protein for rac prophage. | 0.522 |
ymfE | ydaS | b1138 | b1357 | E14 prophage; putative inner membrane protein. | Rac prophage; putative DNA-binding transcriptional regulator. | 0.489 |
ymfE | ymfD | b1138 | b1137 | E14 prophage; putative inner membrane protein. | E14 prophage; putative SAM-dependent methyltransferase. | 0.976 |
ymfE | ymfI | b1138 | b1143 | E14 prophage; putative inner membrane protein. | E14 prophage; uncharacterized protein. | 0.882 |
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