STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ychEUPF0056 family inner membrane protein; Putative channel protein. (215 aa)    
Predicted Functional Partners:
yhcF
Putative transcriptional regulator; Protein involved in transcription and regulation of transcription, DNA-dependent; To E.coli GltF.
      
 0.805
ycgY
Uncharacterized protein.
      
 0.645
yhcG
DUF1016 family protein in the PD-(D/E)XK nuclease superfamily; May be a nuclease involved in DNA recombination and repair.
      
 0.645
yigE
DUF2233 family protein.
      
 0.600
ynfM
Putative arabinose efflux transporter; Putative transport protein.
      
 0.574
yhcC
Putative Fe-S oxidoreductase, Radical SAM superfamily protein; In vitro, can cleave S-adenosyl-L-methionine into methionine and 5'-deoxyadenosine (AdoH); Belongs to the radical SAM superfamily.
   
  
 0.531
ytfL
UPF0053 family inner membrane protein; Putative transport protein.
   
  
 0.530
ydiK
UPF0118 family inner membrane protein.
     
 0.513
ymgE
UPF0410 family putative inner membrane protein; Transglycosylase asociated protein.
      
 0.505
yqhA
UPF0114 family putative inner membrane protein.
   
  
 0.486
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.