Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
clsA | yciU | b1249 | b1248 | Cardiolipin synthase 1; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | UPF0263 family protein. | 0.672 |
clsA | yciY | b1249 | b4595 | Cardiolipin synthase 1; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | Uncharacterized protein; Belongs to the YciY family. | 0.527 |
guaC | yciU | b0104 | b1248 | GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides; Belongs to the IMPDH/GMPR family. GuaC type 1 subfamily. | UPF0263 family protein. | 0.532 |
lepA | yciU | b2569 | b1248 | Back-translocating elongation factor EF4, GTPase; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner; Belongs to the TRAFAC class translation factor GTPase superfam [...] | UPF0263 family protein. | 0.506 |
nrdH | yciU | b2673 | b1248 | Hydrogen donor for NrdEF electron transport system; Electron transport system for the ribonucleotide reductase system NrdEF; Belongs to the glutaredoxin family. | UPF0263 family protein. | 0.458 |
plaP | yciU | b2014 | b1248 | Putrescine importer, low affinity; Putrescine importer. Required for induction of type 1 pili- driven surface motility. | UPF0263 family protein. | 0.531 |
ybdO | yciU | b0603 | b1248 | Putative transcriptional regulator LYSR-type; Protein involved in transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family. | UPF0263 family protein. | 0.624 |
yciU | clsA | b1248 | b1249 | UPF0263 family protein. | Cardiolipin synthase 1; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | 0.672 |
yciU | guaC | b1248 | b0104 | UPF0263 family protein. | GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides; Belongs to the IMPDH/GMPR family. GuaC type 1 subfamily. | 0.532 |
yciU | lepA | b1248 | b2569 | UPF0263 family protein. | Back-translocating elongation factor EF4, GTPase; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner; Belongs to the TRAFAC class translation factor GTPase superfam [...] | 0.506 |
yciU | nrdH | b1248 | b2673 | UPF0263 family protein. | Hydrogen donor for NrdEF electron transport system; Electron transport system for the ribonucleotide reductase system NrdEF; Belongs to the glutaredoxin family. | 0.458 |
yciU | plaP | b1248 | b2014 | UPF0263 family protein. | Putrescine importer, low affinity; Putrescine importer. Required for induction of type 1 pili- driven surface motility. | 0.531 |
yciU | ybdO | b1248 | b0603 | UPF0263 family protein. | Putative transcriptional regulator LYSR-type; Protein involved in transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family. | 0.624 |
yciU | yciY | b1248 | b4595 | UPF0263 family protein. | Uncharacterized protein; Belongs to the YciY family. | 0.489 |
yciU | yehS | b1248 | b2124 | UPF0263 family protein. | DUF1456 family protein. | 0.788 |
yciU | ynaJ | b1248 | b1332 | UPF0263 family protein. | DUF2534 family putative inner membrane protein. | 0.809 |
yciY | clsA | b4595 | b1249 | Uncharacterized protein; Belongs to the YciY family. | Cardiolipin synthase 1; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | 0.527 |
yciY | yciU | b4595 | b1248 | Uncharacterized protein; Belongs to the YciY family. | UPF0263 family protein. | 0.489 |
yehS | yciU | b2124 | b1248 | DUF1456 family protein. | UPF0263 family protein. | 0.788 |
yehS | ynaJ | b2124 | b1332 | DUF1456 family protein. | DUF2534 family putative inner membrane protein. | 0.597 |
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