Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
elfD | yciI | b0939 | b1251 | Putative periplasmic pilin chaperone; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of the ElfA fimbriae; Belongs to the periplasmic pilus chaperone family. | Putative DGPF domain-containing enzyme. | 0.736 |
kch | yciI | b1250 | b1251 | Voltage-gated potassium channel; K(+)-specific ion channel. May play a role in the defense against osmotic shock. | Putative DGPF domain-containing enzyme. | 0.871 |
recX | yciI | b2698 | b1251 | Regulatory protein for RecA; Modulates RecA activity through direct physical interaction. Can inhibit both RecA recombinase and coprotease activities. May have a regulatory role during the SOS response. Inhibits DNA strand exchange in vitro; Belongs to the RecX family. | Putative DGPF domain-containing enzyme. | 0.537 |
tonB | yciI | b1252 | b1251 | Membrane spanning protein in TonB-ExbB-ExbD transport complex; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates such as cobalamin, and various iron compounds (such as iron dicitrate, enterochelin, aerobactin, etc.). In the absence of TonB these receptors bind their substrates but do not carry out active transport. TonB also interacts with some colicins and is involved in the energy-dependent, irreversible steps of bacteriophages phi 80 and T1 infection. It could act to tran [...] | Putative DGPF domain-containing enzyme. | 0.591 |
yciA | yciI | b1253 | b1251 | acyl-CoA esterase; Catalyzes the hydrolysis of the thioester bond in palmitoyl- CoA and malonyl-CoA. | Putative DGPF domain-containing enzyme. | 0.689 |
yciI | elfD | b1251 | b0939 | Putative DGPF domain-containing enzyme. | Putative periplasmic pilin chaperone; Part of the elfADCG-ycbUVF fimbrial operon, which promotes adhesion of bacteria to different abiotic surfaces. Could be required for the biogenesis of the ElfA fimbriae; Belongs to the periplasmic pilus chaperone family. | 0.736 |
yciI | kch | b1251 | b1250 | Putative DGPF domain-containing enzyme. | Voltage-gated potassium channel; K(+)-specific ion channel. May play a role in the defense against osmotic shock. | 0.871 |
yciI | recX | b1251 | b2698 | Putative DGPF domain-containing enzyme. | Regulatory protein for RecA; Modulates RecA activity through direct physical interaction. Can inhibit both RecA recombinase and coprotease activities. May have a regulatory role during the SOS response. Inhibits DNA strand exchange in vitro; Belongs to the RecX family. | 0.537 |
yciI | tonB | b1251 | b1252 | Putative DGPF domain-containing enzyme. | Membrane spanning protein in TonB-ExbB-ExbD transport complex; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates such as cobalamin, and various iron compounds (such as iron dicitrate, enterochelin, aerobactin, etc.). In the absence of TonB these receptors bind their substrates but do not carry out active transport. TonB also interacts with some colicins and is involved in the energy-dependent, irreversible steps of bacteriophages phi 80 and T1 infection. It could act to tran [...] | 0.591 |
yciI | yciA | b1251 | b1253 | Putative DGPF domain-containing enzyme. | acyl-CoA esterase; Catalyzes the hydrolysis of the thioester bond in palmitoyl- CoA and malonyl-CoA. | 0.689 |
yciI | yciN | b1251 | b1273 | Putative DGPF domain-containing enzyme. | DUF2498 protein YciN. | 0.527 |
yciI | ydcY | b1251 | b1446 | Putative DGPF domain-containing enzyme. | DUF2526 family protein. | 0.529 |
yciI | yihD | b1251 | b3858 | Putative DGPF domain-containing enzyme. | DUF1040 protein YihD; To H.influenzae HI_0845. | 0.521 |
yciI | yoaB | b1251 | b1809 | Putative DGPF domain-containing enzyme. | Putative reactive intermediate deaminase; Belongs to the RutC family. | 0.567 |
yciI | yqiC | b1251 | b3042 | Putative DGPF domain-containing enzyme. | BMFP family putative fusogenic protein; Required for efficient ubiquinone (coenzyme Q) biosynthesis under aerobic conditions. UbiK is probably an accessory factor of Ubi enzymes and facilitates ubiquinone biosynthesis by acting as an assembly factor, a targeting factor, or both. Dispensable for ubiquinone biosynthesis under anaerobiosis. | 0.578 |
yciN | yciI | b1273 | b1251 | DUF2498 protein YciN. | Putative DGPF domain-containing enzyme. | 0.527 |
yciN | ydcY | b1273 | b1446 | DUF2498 protein YciN. | DUF2526 family protein. | 0.575 |
yciN | yihD | b1273 | b3858 | DUF2498 protein YciN. | DUF1040 protein YihD; To H.influenzae HI_0845. | 0.525 |
yciN | yoaB | b1273 | b1809 | DUF2498 protein YciN. | Putative reactive intermediate deaminase; Belongs to the RutC family. | 0.542 |
ydcY | yciI | b1446 | b1251 | DUF2526 family protein. | Putative DGPF domain-containing enzyme. | 0.529 |
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