Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| djlB | nrfB | b0646 | b4071 | Putative HscC co-chaperone, uncharacterized J domain-containing protein; Putative enzyme of polynucleotide modification; Protein involved in protein folding. | Nitrite reductase, formate-dependent, penta-heme cytochrome c; Plays a role in nitrite reduction. | 0.547 |
| djlB | stfR | b0646 | b1372 | Putative HscC co-chaperone, uncharacterized J domain-containing protein; Putative enzyme of polynucleotide modification; Protein involved in protein folding. | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | 0.767 |
| djlB | ybbY | b0646 | b0513 | Putative HscC co-chaperone, uncharacterized J domain-containing protein; Putative enzyme of polynucleotide modification; Protein involved in protein folding. | Putative uracil/xanthine transporter; Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily. | 0.736 |
| djlB | yjfJ | b0646 | b4182 | Putative HscC co-chaperone, uncharacterized J domain-containing protein; Putative enzyme of polynucleotide modification; Protein involved in protein folding. | PspA/IM30 family protein; Putative alpha helical protein; Belongs to the PspA/IM30 family. | 0.743 |
| intE | stfR | b1140 | b1372 | E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | 0.821 |
| intE | ydaF | b1140 | b4527 | E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. | Uncharacterized protein, Rac prophage; To E.coli YdfA. | 0.806 |
| intE | ydaV | b1140 | b1360 | E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. | Rac prophage; Putative DNA replication factor. | 0.550 |
| nrfB | djlB | b4071 | b0646 | Nitrite reductase, formate-dependent, penta-heme cytochrome c; Plays a role in nitrite reduction. | Putative HscC co-chaperone, uncharacterized J domain-containing protein; Putative enzyme of polynucleotide modification; Protein involved in protein folding. | 0.547 |
| nrfB | nrfD | b4071 | b4073 | Nitrite reductase, formate-dependent, penta-heme cytochrome c; Plays a role in nitrite reduction. | Formate-dependent nitrite reductase, membrane subunit; Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes; Belongs to the NrfD family. | 0.993 |
| nrfB | stfR | b4071 | b1372 | Nitrite reductase, formate-dependent, penta-heme cytochrome c; Plays a role in nitrite reduction. | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | 0.718 |
| nrfB | yjcO | b4071 | b4078 | Nitrite reductase, formate-dependent, penta-heme cytochrome c; Plays a role in nitrite reduction. | Sel1 family TPR-like repeat protein. | 0.426 |
| nrfD | nrfB | b4073 | b4071 | Formate-dependent nitrite reductase, membrane subunit; Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes; Belongs to the NrfD family. | Nitrite reductase, formate-dependent, penta-heme cytochrome c; Plays a role in nitrite reduction. | 0.993 |
| nrfD | stfR | b4073 | b1372 | Formate-dependent nitrite reductase, membrane subunit; Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes; Belongs to the NrfD family. | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | 0.590 |
| stfR | djlB | b1372 | b0646 | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | Putative HscC co-chaperone, uncharacterized J domain-containing protein; Putative enzyme of polynucleotide modification; Protein involved in protein folding. | 0.767 |
| stfR | intE | b1372 | b1140 | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | E14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. | 0.821 |
| stfR | nrfB | b1372 | b4071 | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | Nitrite reductase, formate-dependent, penta-heme cytochrome c; Plays a role in nitrite reduction. | 0.718 |
| stfR | nrfD | b1372 | b4073 | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | Formate-dependent nitrite reductase, membrane subunit; Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes; Belongs to the NrfD family. | 0.590 |
| stfR | tfaR | b1372 | b1373 | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | Rac prophage; Tail fiber assembly protein homolog from lambdoid prophage Rac; Belongs to the tfa family. | 0.916 |
| stfR | ybbY | b1372 | b0513 | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | Putative uracil/xanthine transporter; Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily. | 0.670 |
| stfR | ydaF | b1372 | b4527 | Rac prophage; putative tail fiber protein; Belongs to the tail fiber family. | Uncharacterized protein, Rac prophage; To E.coli YdfA. | 0.819 |
page 1 of 3