STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbLDUF1318 family protein. (108 aa)    
Predicted Functional Partners:
ynbE
Lipoprotein.
 
  
 0.986
ydbH
Putative membrane-anchored protein, function unknown.
 
  
 0.923
insD1-2
Pseudogene, autotransporter homolog; interrupted by IS2 and IS30.
      
 0.731
insD1-4
Pseudogene, orgA family, part of T3SS PAI ETT2 remnant.
      
 0.731
ynbC
Putative esterase.
      
 0.623
insI1-3
Pseudogene, IS911 transposase B;IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related.
      
 0.623
ynbD
Putative phosphatase inner membrane protein; Putative enzymes; Belongs to the protein-tyrosine phosphatase family.
      
 0.537
ybaM
DUF2496 family protein.
      
 0.534
insD1
IS2 transposase TnpB; Involved in the transposition of the insertion sequence IS2.
      
 0.530
insC1-5
Pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein.
      
 0.530
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.