STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynbDPutative phosphatase inner membrane protein; Putative enzymes; Belongs to the protein-tyrosine phosphatase family. (430 aa)    
Predicted Functional Partners:
ynbC
Putative esterase.
  
 0.995
ynbB
Putative CDP-diglyceride synthase; Putative phosphatidate cytidiltransferase; Protein involved in nucleobase, nucleoside and nucleotide interconversion.
    0.990
ynbA
Inner membrane protein.
 
 
 0.969
yrbL
Mg(2+)-starvation-stimulated protein.
 
 
 0.902
inaA
Acid-inducible Kdo/WaaP family putative kinase; May be an environmental sensor responsive to several stimuli, including internal pH, proton motive force, temperature, and possibly other unknown factors; Belongs to the protein kinase superfamily. KdkA/RfaP family.
   
 0.888
yahD
Ankyrin repeat protein; Putative transcription factor.
  
 0.873
ydbD
PF10971 family putative periplasmic methylglyoxal resistance protein; To E.coli YkiA.
 
    0.840
insD1-2
Pseudogene, autotransporter homolog; interrupted by IS2 and IS30.
      
 0.781
insD1-4
Pseudogene, orgA family, part of T3SS PAI ETT2 remnant.
      
 0.781
lepA
Back-translocating elongation factor EF4, GTPase; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner; Belongs to the TRAFAC class translation factor GTPase superfam [...]
   
 0.761
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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