Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cybB | fixX | b1418 | b0044 | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | Putative 4Fe-4S ferredoxin-type protein; Could be part of an electron transfer system required for anaerobic carnitine reduction. Could be a 3Fe-4S cluster-containing protein; Belongs to the bacterial-type ferredoxin family. FixX subfamily. | 0.463 |
cybB | yagH | b1418 | b0271 | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | CP4-6 prophage; Putative beta-xylosidase. | 0.507 |
cybB | ychA | b1418 | b1214 | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | Transglutaminase-like TPR-repeat protein; Protein involved in regulation of transcription, DNA-dependent; Belongs to the UPF0162 family. | 0.520 |
cybB | ydcA | b1418 | b1419 | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | Putative periplasmic protein. | 0.709 |
cybB | ydcJ | b1418 | b1423 | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | Putative metalloenzyme; To M.tuberculosis Rv3292. | 0.455 |
cybB | yobD | b1418 | b1820 | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | UPF0266 family inner membrane protein. | 0.643 |
fixX | cybB | b0044 | b1418 | Putative 4Fe-4S ferredoxin-type protein; Could be part of an electron transfer system required for anaerobic carnitine reduction. Could be a 3Fe-4S cluster-containing protein; Belongs to the bacterial-type ferredoxin family. FixX subfamily. | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | 0.463 |
yagH | cybB | b0271 | b1418 | CP4-6 prophage; Putative beta-xylosidase. | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | 0.507 |
ychA | cybB | b1214 | b1418 | Transglutaminase-like TPR-repeat protein; Protein involved in regulation of transcription, DNA-dependent; Belongs to the UPF0162 family. | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | 0.520 |
ychA | yobD | b1214 | b1820 | Transglutaminase-like TPR-repeat protein; Protein involved in regulation of transcription, DNA-dependent; Belongs to the UPF0162 family. | UPF0266 family inner membrane protein. | 0.736 |
ydcA | cybB | b1419 | b1418 | Putative periplasmic protein. | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | 0.709 |
ydcA | ydcJ | b1419 | b1423 | Putative periplasmic protein. | Putative metalloenzyme; To M.tuberculosis Rv3292. | 0.622 |
ydcJ | cybB | b1423 | b1418 | Putative metalloenzyme; To M.tuberculosis Rv3292. | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | 0.455 |
ydcJ | ydcA | b1423 | b1419 | Putative metalloenzyme; To M.tuberculosis Rv3292. | Putative periplasmic protein. | 0.622 |
yobD | cybB | b1820 | b1418 | UPF0266 family inner membrane protein. | Cytochrome b561; B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm. | 0.643 |
yobD | ychA | b1820 | b1214 | UPF0266 family inner membrane protein. | Transglutaminase-like TPR-repeat protein; Protein involved in regulation of transcription, DNA-dependent; Belongs to the UPF0162 family. | 0.736 |