STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfKCold shock protein YdfK; Cryptic prophage Qin/Kim. (77 aa)    
Predicted Functional Partners:
pinQ
Qin prophage; putative site-specific recombinase; Belongs to the site-specific recombinase resolvase family.
  
  
 0.914
pinR
Rac prophage; putative site-specific recombinase.
   
  
 0.827
tfaQ
Qin prophage; Tail fiber assembly protein homolog from lambdoid prophage Qin; Belongs to the tfa family.
   
  
 0.741
ybfD
H repeat-associated putative transposase YbfD; Pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein; Belongs to the transposase 11 family.
   
  
 0.734
tfaR
Rac prophage; Tail fiber assembly protein homolog from lambdoid prophage Rac; Belongs to the tfa family.
   
  
 0.733
ynaE
Cold shock protein, Rac prophage.
   
 
0.659
yhaI
DUF805 family inner membrane protein; Putative cytochrome.
      
 0.645
ybjM
Inner membrane protein.
      
 0.644
ldrC
Small toxic polypeptide.
      
 0.622
yhhI
H repeat-associated putative transposase YhhI; Pseudogene fragment; Belongs to the transposase 11 family.
   
  
 0.591
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.