STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dicCRepressor protein of division inhibition gene dicB; This protein is a repressor of division inhibition gene dicB. (76 aa)    
Predicted Functional Partners:
dicA
Qin prophage; This protein is a repressor of division inhibition gene dicB.
     
 0.953
dicB
Qin prophage; Involved in cell division inhibition; this function can be repressed by DicA and DicC proteins as well as antitoxin CbeA (yeeU).
   
  
 0.903
ydfA
Qin prophage; uncharacterized protein; To E.coli YdaF.
  
  
 0.854
ynfN
Qin prophage; cold shock-induced protein.
      
 0.624
yfdS
CPS-53 (KpLE1) prophage; uncharacterized protein; To the N-terminal region of phage HK97/HK620 Gp37/hpaH.
   
  
 0.560
ydaT
Rac prophage; uncharacterized protein.
   
  
 0.546
ymfL
E14 prophage; putative DNA-binding transcriptional regulator.
  
  
 0.537
yfdR
CPS-53 (KpLE1) prophage; conserved protein.
   
  
 0.535
yfdT
CPS-53 (KpLE1) prophage; uncharacterized protein.
      
 0.519
kilR
Killing protein, Rac prophage; Causes inhibition of cell division. At high levels of expression, can also abolish the rod shape of the cells. Division inhibition by KilR can be relieved by overexpression of the cell division protein FtsZ.
   
  
 0.510
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.