STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfBQin prophage; uncharacterized protein. (42 aa)    
Predicted Functional Partners:
ydfA
Qin prophage; uncharacterized protein; To E.coli YdaF.
  
  
 0.987
ydfC
Uncharacterized protein, Qin prophage.
  
  
 0.947
ydfD
Qin prophage; uncharacterized protein.
   
  
 0.812
yfcA
TauE/TSUP family inner membrane protein; Putative structural protein.
      
 0.657
yohO
Putative membrane protein; Belongs to the UPF0387 family.
   
  
 0.629
yniD
Uncharacterized protein YniD; Pseudogene, ankyrin repeats.
      
 0.624
yjeV
Uncharacterized protein.
      
 0.623
ylcH
Uncharacterized protein, DLP12 prophage.
      
 0.622
yoaI
Uncharacterized protein.
      
 0.530
ykfF
CP4-6 prophage; uncharacterized protein; Belongs to the UPF0401 family.
      
 0.528
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.