STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfAUPF0060 family inner membrane protein. (108 aa)    
Predicted Functional Partners:
ynfB
UPF0482 family putative periplasmic protein.
  
  
 0.813
rspA
Bifunctional D-altronate/D-mannonate dehydratase; Probably involved in the degradation of homoserine lactone (HSL) or of a metabolite of HSL that signals starvation.
 
  
 0.799
ddpC
D,D-dipeptide ABC transporter permease; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.
      
 0.731
yiaB
YiaAB family inner membrane protein.
      
 0.730
rspB
Starvation-sensing protein RspB; Not known; probable catabolic enzyme.
  
  
 0.663
ycgJ
Uncharacterized protein.
   
  
 0.650
yigG
PRK11371 family inner membrane protein.
      
 0.600
yieK
Putative 6-phosphogluconolactonase; Pyrimidine-specific nucleoside hydrolase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family.
      
 0.543
ydgC
GlpM family inner membrane protein.
   
  
 0.535
ybjH
Uncharacterized protein.
   
    0.531
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.