Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
speG | ynfA | b1584 | b1582 | Spermidine N(1)-acetyltransferase; Involved in the protection against polyamine toxicity by regulating their concentration. Catalyzes the transfer of an acetyl group from acetyl coenzyme A (AcCoA) to the primary amino groups of spermidine to yield N(1)- and N(8)-acetylspermidine. It can also use polyamines such as spermine, but not putrescine. | UPF0060 family inner membrane protein. | 0.477 |
speG | ynfB | b1584 | b1583 | Spermidine N(1)-acetyltransferase; Involved in the protection against polyamine toxicity by regulating their concentration. Catalyzes the transfer of an acetyl group from acetyl coenzyme A (AcCoA) to the primary amino groups of spermidine to yield N(1)- and N(8)-acetylspermidine. It can also use polyamines such as spermine, but not putrescine. | UPF0482 family putative periplasmic protein. | 0.999 |
yccT | ynfB | b0964 | b1583 | UPF0319 family protein; Belongs to the UPF0319 family. | UPF0482 family putative periplasmic protein. | 0.409 |
ycgJ | ynfA | b1177 | b1582 | Uncharacterized protein. | UPF0060 family inner membrane protein. | 0.650 |
ycgJ | ynfB | b1177 | b1583 | Uncharacterized protein. | UPF0482 family putative periplasmic protein. | 0.646 |
yedD | yiaF | b1928 | b3554 | Lipoprotein. | Barrier effect co-colonization resistance factor; DUF3053 family lipoprotein. | 0.671 |
yedD | ynfB | b1928 | b1583 | Lipoprotein. | UPF0482 family putative periplasmic protein. | 0.644 |
yiaF | yedD | b3554 | b1928 | Barrier effect co-colonization resistance factor; DUF3053 family lipoprotein. | Lipoprotein. | 0.671 |
yiaF | ynfB | b3554 | b1583 | Barrier effect co-colonization resistance factor; DUF3053 family lipoprotein. | UPF0482 family putative periplasmic protein. | 0.419 |
yiiS | yjbQ | b3922 | b4056 | UPF0381 family protein; Belongs to the UPF0381 family. | Thiamine phosphate synthase; Belongs to the UPF0047 family. | 0.539 |
yiiS | yjbR | b3922 | b4057 | UPF0381 family protein; Belongs to the UPF0381 family. | DUF419 family protein. | 0.550 |
yiiS | yjjU | b3922 | b4377 | UPF0381 family protein; Belongs to the UPF0381 family. | Putative patatin-like family phospholipase; Probable lipid hydrolase. | 0.543 |
yiiS | ynfB | b3922 | b1583 | UPF0381 family protein; Belongs to the UPF0381 family. | UPF0482 family putative periplasmic protein. | 0.489 |
yjbQ | yiiS | b4056 | b3922 | Thiamine phosphate synthase; Belongs to the UPF0047 family. | UPF0381 family protein; Belongs to the UPF0381 family. | 0.539 |
yjbQ | yjbR | b4056 | b4057 | Thiamine phosphate synthase; Belongs to the UPF0047 family. | DUF419 family protein. | 0.970 |
yjbQ | yjjU | b4056 | b4377 | Thiamine phosphate synthase; Belongs to the UPF0047 family. | Putative patatin-like family phospholipase; Probable lipid hydrolase. | 0.594 |
yjbQ | ynfB | b4056 | b1583 | Thiamine phosphate synthase; Belongs to the UPF0047 family. | UPF0482 family putative periplasmic protein. | 0.488 |
yjbR | yiiS | b4057 | b3922 | DUF419 family protein. | UPF0381 family protein; Belongs to the UPF0381 family. | 0.550 |
yjbR | yjbQ | b4057 | b4056 | DUF419 family protein. | Thiamine phosphate synthase; Belongs to the UPF0047 family. | 0.970 |
yjbR | yjjU | b4057 | b4377 | DUF419 family protein. | Putative patatin-like family phospholipase; Probable lipid hydrolase. | 0.610 |
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