STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhQAutotransporter adhesin-related protein; Possible enzyme. (418 aa)    
Predicted Functional Partners:
ydjY
Putative ferrodoxin-like lipoprotein.
      
 0.644
yjcF
Pentapeptide repeats protein.
      
 0.623
ydiH
Uncharacterized protein.
      
 0.529
yeaQ
UPF0410 family protein.
   
  
 0.527
ydjX
TVP38/TMEM64 family inner membrane protein; Belongs to the TVP38/TMEM64 family.
      
 0.506
ybaL
Inner membrane putative NAD(P)-binding transporter; Putative transport protein.
      
 0.499
yibL
Ribosome-associated DUF2810 family protein.
      
 0.455
ybcJ
Ribosome-associated protein; Its structure and the presence of conserved basic residues indicates that it probably binds RNA.
      
 0.452
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.