Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rbsK | yeaO | b3752 | b1792 | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily. | DUF488 family protein; To M.tuberculosis Rv3073c. | 0.753 |
yeaM | yeaN | b1790 | b1791 | Putative DNA-binding transcriptional regulator; Negatively regulates expression of the nimT operon and its own expression. Acts by binding to the nimR-nimT intergenic region. | Putative MFS transporter, inner membrane protein; Involved in efflux of 2-nitroimidazole. Belongs to the major facilitator superfamily. Cyanate porter (TC 2.A.1.17) family. | 0.933 |
yeaM | yeaO | b1790 | b1792 | Putative DNA-binding transcriptional regulator; Negatively regulates expression of the nimT operon and its own expression. Acts by binding to the nimR-nimT intergenic region. | DUF488 family protein; To M.tuberculosis Rv3073c. | 0.473 |
yeaN | yeaM | b1791 | b1790 | Putative MFS transporter, inner membrane protein; Involved in efflux of 2-nitroimidazole. Belongs to the major facilitator superfamily. Cyanate porter (TC 2.A.1.17) family. | Putative DNA-binding transcriptional regulator; Negatively regulates expression of the nimT operon and its own expression. Acts by binding to the nimR-nimT intergenic region. | 0.933 |
yeaN | yeaO | b1791 | b1792 | Putative MFS transporter, inner membrane protein; Involved in efflux of 2-nitroimidazole. Belongs to the major facilitator superfamily. Cyanate porter (TC 2.A.1.17) family. | DUF488 family protein; To M.tuberculosis Rv3073c. | 0.603 |
yeaO | rbsK | b1792 | b3752 | DUF488 family protein; To M.tuberculosis Rv3073c. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily. | 0.753 |
yeaO | yeaM | b1792 | b1790 | DUF488 family protein; To M.tuberculosis Rv3073c. | Putative DNA-binding transcriptional regulator; Negatively regulates expression of the nimT operon and its own expression. Acts by binding to the nimR-nimT intergenic region. | 0.473 |
yeaO | yeaN | b1792 | b1791 | DUF488 family protein; To M.tuberculosis Rv3073c. | Putative MFS transporter, inner membrane protein; Involved in efflux of 2-nitroimidazole. Belongs to the major facilitator superfamily. Cyanate porter (TC 2.A.1.17) family. | 0.603 |