STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yebBDUF830 family protein; To E.coli YiiX. (200 aa)    
Predicted Functional Partners:
yhgE
DUF4153 family putative inner membrane protein; Putative transport.
  
  
 0.938
djlB
Putative HscC co-chaperone, uncharacterized J domain-containing protein; Putative enzyme of polynucleotide modification; Protein involved in protein folding.
  
    0.745
ynbD
Putative phosphatase inner membrane protein; Putative enzymes; Belongs to the protein-tyrosine phosphatase family.
  
     0.714
yfeK
Uncharacterized protein.
  
     0.679
ynbC
Putative esterase.
  
    0.677
ylbF
Putative anaerobic allantoin catabolic oxamate carbamoyltransferase; Putative carboxylase.
  
     0.656
yjjA
Putative DUF2501 family periplasmic protein; Putative glycoprotein/receptor.
      
 0.644
yfaL
Adhesin; Probably an autotransporter.
  
    0.619
ynbA
Inner membrane protein.
  
    0.572
yjjB
DUF3815 family inner membrane protein.
   
  
 0.572
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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