STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypjKCP4-57 prophage; putative inner membrane protein; To E.coli YkfL. (78 aa)    
Predicted Functional Partners:
ydiJ
Putative FAD-linked oxidoreductase; Putative oxidase.
      
 0.785
yfjS
CP4-57 prophage; Does not induce degP when overexpressed unless it is mutated to resemble YafY.
       0.779
gsiA
Glutathione ABC transporter ATPase; Part of the ABC transporter complex GsiABCD involved in glutathione import. Responsible for energy coupling to the transport system.
      
 0.732
yfjT
CP4-57 prophage; putative periplasmic protein; To E.coli YkfB.
       0.697
cedA
Cell division modulator; Activates the cell division inhibited by chromosomal DNA over-replication; Belongs to the CedA family.
   
  
 0.648
yfjR
CP4-57 prophage; putative DNA-binding transcriptional regulator.
       0.639
yjbQ
Thiamine phosphate synthase; Belongs to the UPF0047 family.
      
 0.624
yahE
DUF2877 family protein.
   
  
 0.531
setC
Sugar efflux transporter C; Involved in the efflux of sugars. The physiological role may be the detoxification of non-metabolizable sugar analogs; Belongs to the major facilitator superfamily. Set transporter family.
      
 0.530
nlpA
Cytoplasmic membrane lipoprotein-28; Lipoprotein-28.
      
 0.521
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.