STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqhGDUF3828 family putative periplasmic protein. (308 aa)    
Predicted Functional Partners:
ynjI
Inner membrane protein.
      
 0.732
yqhH
Outer membrane lipoprotein, Lpp paralog.
  
    0.670
yghG
Lipoprotein YghG; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane. In a functional T2SS this subunit helps assemble the outer membrane channel; Belongs to the GspS/AspS pilotin family.
      
 0.624
yecT
Uncharacterized protein; To R.meliloti R02472.
      
 0.600
ynbA
Inner membrane protein.
   
  
 0.591
yidL
Putative ARAC-type regulatory protein; Protein involved in transcription activator activity and transcription.
   
  
 0.535
ygiZ
Inner membrane protein.
      
 0.528
bglJ
Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO.
      
 0.519
sfsB
malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars.
   
  
 0.514
yeaR
DUF1971 family protein, nitrate-inducible; Protein involved in xenobiotic metabolic process.
      
 0.473
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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