STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhaBUncharacterized protein. (179 aa)    
Predicted Functional Partners:
ygcN
Putative oxidoreductase; Probably accepts electrons from YgcQ/YgcR and reduces a quinone; Belongs to the ETF-QO/FixC family.
      
 0.907
yhaC
Pentapetide repeats-related protein.
  
    0.859
ydcP
Putative peptidase; Responsible for the formation of the 5-hydroxycytidine modification at the C2501 position (ho5C2501) of 23S rRNA. May be a Fe- S protein that catalyzes ho5C2501 formation using prephenate as a hydroxyl group donor.
      
 0.810
yqeK
Uncharacterized protein.
   
    0.720
ygeG
Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family.
   
    0.603
tdcR
L-threonine dehydratase operon activator protein; Probable trans-acting positive activator for the tdc operon.
  
    0.600
ybgD
Putative fimbrial-like protein; Belongs to the fimbrial protein family.
   
  
 0.558
ygeH
Putative transcriptional regulator; Putative invasion protein.
   
    0.539
ysaB
Uncharacterized protein.
      
 0.529
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.