STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yidHDUF202 family inner membrane protein. (115 aa)    
Predicted Functional Partners:
yidG
Inner membrane protein.
  
    0.831
yidF
Putative Cys-type oxidative YidJ-maturating enzyme; Putative transcriptional regulator.
  
    0.792
ynbA
Inner membrane protein.
      
 0.788
ygaP
DUF2892 family inner membrane rhodanese.
      
 0.680
rcdA
Transcriptional regulator of csgD and ybiJI; Regulates the expression of a number of genes involved in biofilm formation and stress response. Target genes include six stress- response transcriptional regulators: csgD, which is a master regulator of biofilm formation, appY, sxy, ycgF, fimB and rcdA itself. This indicates that a large number of genes must be regulated indirectly via these transcriptional regulators. Acts by binding to the upstream region of its target genes.
  
     0.647
ybeQ
Sel1 family TPR-like repeat protein; To E.coli YbeT.
      
 0.645
yaaU
Putative MFS sugar transporter; Putative transport protein.
      
 0.644
ybhJ
Aconitase family protein; Putative enzyme.
      
 0.641
yjbB
Putative alpha helix protein.
   
  
 0.631
yidI
Inner membrane protein.
  
    0.548
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.