Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cusF | yidB | b0573 | b3698 | Periplasmic copper- and silver-binding protein; Part of a cation efflux system that mediates resistance to copper and silver. Binds one copper per polypeptide. | DUF937 family protein. | 0.521 |
gyrB | yidB | b3699 | b3698 | DNA gyrase, subunit B; DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner to maintain chromosomes in an underwound state. This makes better substrates for topoisomerase 4 (ParC and ParE) which is the main enzyme that unlinks newly replicated chromosomes in E.coli. Gyrase catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes. Relaxes negatively supercoiled DNA in an ATP-independent manner. E.coli gyrase has higher supercoiling activity than other characterized bacterial gyrases; at compa [...] | DUF937 family protein. | 0.442 |
minE | yidB | b1174 | b3698 | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | DUF937 family protein. | 0.812 |
minE | ymgI | b1174 | b4593 | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | Uncharacterized protein. | 0.899 |
ydiB | yidB | b1692 | b3698 | Quinate/shikimate 5-dehydrogenase, NAD(P)-binding; The actual biological function of YdiB remains unclear, nor is it known whether 3-dehydroshikimate or quinate represents the natural substrate. Catalyzes the reversible NAD-dependent reduction of both 3-dehydroshikimate (DHSA) and 3-dehydroquinate to yield shikimate (SA) and quinate, respectively. It can use both NAD or NADP for catalysis, however it has higher catalytic efficiency with NAD. | DUF937 family protein. | 0.454 |
yfaL | yidB | b2233 | b3698 | Adhesin; Probably an autotransporter. | DUF937 family protein. | 0.518 |
yhfZ | yidB | b3383 | b3698 | Putative DNA-binding transcriptional regulator. | DUF937 family protein. | 0.809 |
yhfZ | yijO | b3383 | b3954 | Putative DNA-binding transcriptional regulator. | Putative ARAC-type regulatory protein; Protein involved in transcription activator activity and transcription. | 0.814 |
yidA | yidB | b3697 | b3698 | Sugar phosphate phosphatase; Catalyzes the dephosphorylation of different sugar phosphates including erythrose-4-phosphate (Ery4P), ribose-5-phosphate (Ribu5P), fructose-1-phosphate (Fru1P), fructose-6-phosphate (Fru6P), glucose-6-P (Glu6P), and also imidodiphosphate (Imido-di-P) and acetyl phosphate (Acetyl-P). Selectively hydrolyzes alpha-D-glucose-1-phosphate (Glu1P) and has no activity with the beta form. | DUF937 family protein. | 0.831 |
yidB | cusF | b3698 | b0573 | DUF937 family protein. | Periplasmic copper- and silver-binding protein; Part of a cation efflux system that mediates resistance to copper and silver. Binds one copper per polypeptide. | 0.521 |
yidB | gyrB | b3698 | b3699 | DUF937 family protein. | DNA gyrase, subunit B; DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner to maintain chromosomes in an underwound state. This makes better substrates for topoisomerase 4 (ParC and ParE) which is the main enzyme that unlinks newly replicated chromosomes in E.coli. Gyrase catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes. Relaxes negatively supercoiled DNA in an ATP-independent manner. E.coli gyrase has higher supercoiling activity than other characterized bacterial gyrases; at compa [...] | 0.442 |
yidB | minE | b3698 | b1174 | DUF937 family protein. | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | 0.812 |
yidB | ydiB | b3698 | b1692 | DUF937 family protein. | Quinate/shikimate 5-dehydrogenase, NAD(P)-binding; The actual biological function of YdiB remains unclear, nor is it known whether 3-dehydroshikimate or quinate represents the natural substrate. Catalyzes the reversible NAD-dependent reduction of both 3-dehydroshikimate (DHSA) and 3-dehydroquinate to yield shikimate (SA) and quinate, respectively. It can use both NAD or NADP for catalysis, however it has higher catalytic efficiency with NAD. | 0.454 |
yidB | yfaL | b3698 | b2233 | DUF937 family protein. | Adhesin; Probably an autotransporter. | 0.518 |
yidB | yhfZ | b3698 | b3383 | DUF937 family protein. | Putative DNA-binding transcriptional regulator. | 0.809 |
yidB | yidA | b3698 | b3697 | DUF937 family protein. | Sugar phosphate phosphatase; Catalyzes the dephosphorylation of different sugar phosphates including erythrose-4-phosphate (Ery4P), ribose-5-phosphate (Ribu5P), fructose-1-phosphate (Fru1P), fructose-6-phosphate (Fru6P), glucose-6-P (Glu6P), and also imidodiphosphate (Imido-di-P) and acetyl phosphate (Acetyl-P). Selectively hydrolyzes alpha-D-glucose-1-phosphate (Glu1P) and has no activity with the beta form. | 0.831 |
yidB | yijO | b3698 | b3954 | DUF937 family protein. | Putative ARAC-type regulatory protein; Protein involved in transcription activator activity and transcription. | 0.645 |
yidB | ymgI | b3698 | b4593 | DUF937 family protein. | Uncharacterized protein. | 0.732 |
yidB | ypjA | b3698 | b2647 | DUF937 family protein. | Adhesin-like autotransporter; Putative ATP-binding component of a transport system. | 0.542 |
yijO | yhfZ | b3954 | b3383 | Putative ARAC-type regulatory protein; Protein involved in transcription activator activity and transcription. | Putative DNA-binding transcriptional regulator. | 0.814 |
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