STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
insA-7IS1 repressor TnpA. (91 aa)    
Predicted Functional Partners:
insB1-4
IS1 transposase B; Absolutely required for transposition of IS1.
 
   
 0.974
insB1-3
Pseudogene.
 
   
 0.916
insB1-5
IS1 transposase B.
 
   
 0.912
insB1-6
IS1 transposase B.
 
   
 0.911
insB1-2
Insertion element IS1 2 protein InsB; Absolutely required for transposition of IS1.
 
   
 0.906
insB1
IS1 transposase B; Absolutely required for transposition of IS1.
 
   
 0.892
insH1-5
Transposase InsH for insertion sequence element IS5Y; Involved in the transposition of the insertion sequence IS5.
      
 0.600
insH1-10
Pseudogene fragment; interrupted by IS5.
      
 0.600
gfcA
O-antigen capsule production threonine-rich inner membrane protein.
       0.549
insH1
Transposase InsH for insertion sequence element IS5R; Involved in the transposition of the insertion sequence IS5.
      
 0.543
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.