STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ymdFKGG family protein; Belongs to the con-10 family. (57 aa)    
Predicted Functional Partners:
yjbJ
Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
   
  
 0.592
yahO
Periplasmic protein, function unknown, YhcN family.
   
  
 0.574
yegP
UPF0339 family protein; Belongs to the UPF0339 family. Duplicated subfamily.
      
 0.530
ybaA
DUF1428 family protein.
      
 0.529
yobH
Uncharacterized protein.
      
 0.527
ybgS
Putative homeobox protein.
   
  
 0.457
yccJ
Uncharacterized protein.
  
    0.440
chaB
Cation transport regulator; Might be a regulator of the sodium-potassium/proton antiporter ChaA; Belongs to the ChaB family.
   
  
 0.433
wrbA
NAD(P)H:quinone oxidoreductase; It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide. It prefers NADH over NADPH.
  
  
 0.416
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: medium (80%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.