STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfOUncharacterized protein YnfO; Pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin. (77 aa)    
Predicted Functional Partners:
ygaC
Uncharacterized protein.
      
 0.810
garP
Putative (D)-galactarate transporter; Uptake of D-galactarate; Belongs to the major facilitator superfamily. Phthalate permease family.
      
 0.803
yhhX
Putative regulator; Belongs to the Gfo/Idh/MocA family. Biliverdin reductase subfamily.
      
 0.790
clcB
H(+)/Cl(-) exchange transporter; Probably acts as an electrical shunt for an outwardly- directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response. Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily.
      
 0.759
yccF
DUF307 family inner membrane protein.
      
 0.756
nohD
DLP12 prophage; Bacteriophage DNA packaging protein.
   
 
 0.753
tfaQ
Qin prophage; Tail fiber assembly protein homolog from lambdoid prophage Qin; Belongs to the tfa family.
   
  
 0.696
ydfO
Qin prophage; uncharacterized protein; To E.coli YbcV and YcgX.
  
  
 0.648
stfQ
Qin prophage; putative side tail fibre assembly protein; Belongs to the tail fiber family.
   
  
 0.625
tfaE
E14 prophage; putative tail fiber assembly protein.
   
  
 0.587
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
Server load: low (26%) [HD]