Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cbdX | yjeV | b4592 | b4670 | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | Uncharacterized protein. | 0.510 |
cbdX | ylcH | b4592 | b4588 | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | Uncharacterized protein, DLP12 prophage. | 0.507 |
cbdX | yncL | b4592 | b4598 | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | Stress-induced small inner membrane enterobacterial protein. | 0.643 |
cbdX | yniD | b4592 | b4535 | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | Uncharacterized protein YniD; Pseudogene, ankyrin repeats. | 0.519 |
cbdX | yoaI | b4592 | b1788 | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | Uncharacterized protein. | 0.451 |
cbdX | yohO | b4592 | b4542 | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | Putative membrane protein; Belongs to the UPF0387 family. | 0.519 |
cbdX | yohP | b4592 | b4679 | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | Uncharacterized membrane protein YohP; Pseudogene; putative channel/filament proteins. | 0.601 |
ilvX | yncL | b4669 | b4598 | Uncharacterized protein. | Stress-induced small inner membrane enterobacterial protein. | 0.621 |
ilvX | yohP | b4669 | b4679 | Uncharacterized protein. | Uncharacterized membrane protein YohP; Pseudogene; putative channel/filament proteins. | 0.738 |
ydcX | ydcY | b1445 | b1446 | DUF2566 family protein; Acts as an orphan toxin which is important for maintaining cell fitness during stress related to the stringent response (decreased amino acid, purine and thymidine availability). Overexpression inhibits cell growth and increases the formation of persister cells. Causes 99.9% of cells to undergo bacterial lysis within 2 hours after induction; nucleoids condense, the cytoplasm seems empty and the periplasmic space enlarges. The intracellular ATP level decreases about 27-fold suggesting the membrane potential may be disrupted. | DUF2526 family protein. | 0.783 |
ydcX | yncL | b1445 | b4598 | DUF2566 family protein; Acts as an orphan toxin which is important for maintaining cell fitness during stress related to the stringent response (decreased amino acid, purine and thymidine availability). Overexpression inhibits cell growth and increases the formation of persister cells. Causes 99.9% of cells to undergo bacterial lysis within 2 hours after induction; nucleoids condense, the cytoplasm seems empty and the periplasmic space enlarges. The intracellular ATP level decreases about 27-fold suggesting the membrane potential may be disrupted. | Stress-induced small inner membrane enterobacterial protein. | 0.741 |
ydcY | ydcX | b1446 | b1445 | DUF2526 family protein. | DUF2566 family protein; Acts as an orphan toxin which is important for maintaining cell fitness during stress related to the stringent response (decreased amino acid, purine and thymidine availability). Overexpression inhibits cell growth and increases the formation of persister cells. Causes 99.9% of cells to undergo bacterial lysis within 2 hours after induction; nucleoids condense, the cytoplasm seems empty and the periplasmic space enlarges. The intracellular ATP level decreases about 27-fold suggesting the membrane potential may be disrupted. | 0.783 |
ydcY | yncL | b1446 | b4598 | DUF2526 family protein. | Stress-induced small inner membrane enterobacterial protein. | 0.697 |
yjeV | cbdX | b4670 | b4592 | Uncharacterized protein. | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | 0.510 |
yjeV | ylcH | b4670 | b4588 | Uncharacterized protein. | Uncharacterized protein, DLP12 prophage. | 0.802 |
yjeV | yncL | b4670 | b4598 | Uncharacterized protein. | Stress-induced small inner membrane enterobacterial protein. | 0.703 |
yjeV | yniD | b4670 | b4535 | Uncharacterized protein. | Uncharacterized protein YniD; Pseudogene, ankyrin repeats. | 0.804 |
yjeV | yoaI | b4670 | b1788 | Uncharacterized protein. | Uncharacterized protein. | 0.740 |
yjeV | yohO | b4670 | b4542 | Uncharacterized protein. | Putative membrane protein; Belongs to the UPF0387 family. | 0.804 |
ylcH | cbdX | b4588 | b4592 | Uncharacterized protein, DLP12 prophage. | Putative cytochrome bd-II oxidase subunit; Might be part of cytochrome bd-II oxidase (appB and appC). Able to restore reductant resistance to a cydX deletion mutant upon overexpression. CydX and this protein may have some functional overlap. | 0.507 |
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