node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplA | rplL | MPN_220 | MPN_539 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
rplA | rplW | MPN_220 | MPN_167 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (By similarity); Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplA | rpmC | MPN_220 | MPN_173 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L29; MPN173(new), 659(Himmelreich et al., 1996); Belongs to the universal ribosomal protein uL29 family. | 0.999 |
rplA | rpmF | MPN_220 | MPN_540 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L32; MPN540(new), 302(Himmelreich et al., 1996); Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rplA | rpmG2 | MPN_220 | MPN_069 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L33 type2; MPN069(new); Belongs to the bacterial ribosomal protein bL33 family. | 0.951 |
rplA | rpsH | MPN_220 | MPN_179 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rplA | rpsI | MPN_220 | MPN_616 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein S9; MPN616(new), 226(Himmelreich et al., 1996); Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplA | rpsM | MPN_220 | MPN_189 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplA | secE | MPN_220 | MPN_068 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SecE; MPN068(new), 086(Himmelreich et al., 1996). | 0.918 |
rplA | smpB | MPN_220 | MPN_074 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.954 |
rplL | rplA | MPN_539 | MPN_220 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.999 |
rplL | rplW | MPN_539 | MPN_167 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (By similarity); Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplL | rpmC | MPN_539 | MPN_173 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein L29; MPN173(new), 659(Himmelreich et al., 1996); Belongs to the universal ribosomal protein uL29 family. | 0.999 |
rplL | rpmF | MPN_539 | MPN_540 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein L32; MPN540(new), 302(Himmelreich et al., 1996); Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rplL | rpmG2 | MPN_539 | MPN_069 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein L33 type2; MPN069(new); Belongs to the bacterial ribosomal protein bL33 family. | 0.975 |
rplL | rpsH | MPN_539 | MPN_179 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.998 |
rplL | rpsI | MPN_539 | MPN_616 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein S9; MPN616(new), 226(Himmelreich et al., 1996); Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplL | rpsM | MPN_539 | MPN_189 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.998 |
rplL | secE | MPN_539 | MPN_068 | Ribosomal protein L7/L12 ('A' type); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | SecE; MPN068(new), 086(Himmelreich et al., 1996). | 0.654 |
rplW | rplA | MPN_167 | MPN_220 | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (By similarity); Belongs to the universal ribosomal protein uL23 family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.999 |