STRINGSTRING
Zc3h18 Zc3h18 Slain2 Slain2 Lemd2 Lemd2 Fryl Fryl Tmem132d Tmem132d Tcof1 Tcof1 Bms1 Bms1 Srrm2 Srrm2 Thoc2 Thoc2 Srrt Srrt Hmgn2 Hmgn2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zc3h18Zinc finger CCCH domain-containing protein 18. (1007 aa)    
Predicted Functional Partners:
Slain2
Similar to RIKEN cDNA 5033405K12 (Predicted).
   
 
 0.736
Lemd2
LEM domain nuclear envelope protein 2.
   
 
 0.619
Fryl
FRY-like transcription coactivator.
      
 0.615
Tmem132d
Transmembrane protein 132D; May serve as a cell-surface marker for oligodendrocyte differentiation; Belongs to the TMEM132 family.
      
 0.603
Tcof1
Treacle ribosome biogenesis factor 1.
   
 
 0.592
Bms1
BMS1 ribosome biogenesis factor.
   
   0.590
Srrm2
Serine/arginine repetitive matrix 2.
   
 
 0.583
Thoc2
THO complex 2.
   
 
 0.582
Srrt
ARS2 domain-containing protein.
   
 
 0.556
Hmgn2
Non-histone chromosomal protein HMG-17; Binds to the inner side of the nucleosomal DNA thus altering the interaction between the DNA and the histone octamer. May be involved in the process which maintains transcribable genes in a unique chromatin conformation (By similarity).
   
 
 0.554
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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