Rup2 protein (Rattus norvegicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Rup2

Urinary protein 1. (101 aa)

Predicted Functional Partners:

RGD1304554

0.658

LOC100359924

0.613

Pate3

0.611

UST4r

0.585

P22k15

0.581

Ly6g5b

0.566

LOC103693040

0.565

Pate2

0.565

LOC100361828

0.564

Ly6g6g

0.564

Your Current Organism:

Rattus norvegicus

NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100359924	LOC100361828	ENSRNOP00000066423	ENSRNOP00000057190	Prostate and testis-expressed N-like.	Prostate and testis expressed C.	0.896
LOC100359924	LOC103693040	ENSRNOP00000066423	ENSRNOP00000039556	Prostate and testis-expressed N-like.	Prostate and testis-expressed protein 2-like.	0.614
LOC100359924	Ly6g5b	ENSRNOP00000066423	ENSRNOP00000032293	Prostate and testis-expressed N-like.	Lymphocyte antigen 6 complex locus protein G5b.	0.512
LOC100359924	Ly6g6g	ENSRNOP00000066423	ENSRNOP00000067977	Prostate and testis-expressed N-like.	Lymphocyte antigen 6 complex, locus G6G.	0.558
LOC100359924	Pate2	ENSRNOP00000066423	ENSRNOP00000057193	Prostate and testis-expressed N-like.	Prostate and testis-expressed 2.	0.748
LOC100359924	Pate3	ENSRNOP00000066423	ENSRNOP00000064094	Prostate and testis-expressed N-like.	Prostate and testis expressed DJ.	0.867
LOC100359924	RGD1304554	ENSRNOP00000066423	ENSRNOP00000058806	Prostate and testis-expressed N-like.	LOC363043 (Predicted).	0.893
LOC100359924	Rup2	ENSRNOP00000066423	ENSRNOP00000050106	Prostate and testis-expressed N-like.	Urinary protein 1.	0.613
LOC100361828	LOC100359924	ENSRNOP00000057190	ENSRNOP00000066423	Prostate and testis expressed C.	Prostate and testis-expressed N-like.	0.896
LOC100361828	LOC103693040	ENSRNOP00000057190	ENSRNOP00000039556	Prostate and testis expressed C.	Prostate and testis-expressed protein 2-like.	0.560
LOC100361828	Ly6g5b	ENSRNOP00000057190	ENSRNOP00000032293	Prostate and testis expressed C.	Lymphocyte antigen 6 complex locus protein G5b.	0.547
LOC100361828	Ly6g6g	ENSRNOP00000057190	ENSRNOP00000067977	Prostate and testis expressed C.	Lymphocyte antigen 6 complex, locus G6G.	0.561
LOC100361828	Pate2	ENSRNOP00000057190	ENSRNOP00000057193	Prostate and testis expressed C.	Prostate and testis-expressed 2.	0.748
LOC100361828	Pate3	ENSRNOP00000057190	ENSRNOP00000064094	Prostate and testis expressed C.	Prostate and testis expressed DJ.	0.871
LOC100361828	Rup2	ENSRNOP00000057190	ENSRNOP00000050106	Prostate and testis expressed C.	Urinary protein 1.	0.564
LOC103693040	LOC100359924	ENSRNOP00000039556	ENSRNOP00000066423	Prostate and testis-expressed protein 2-like.	Prostate and testis-expressed N-like.	0.614
LOC103693040	LOC100361828	ENSRNOP00000039556	ENSRNOP00000057190	Prostate and testis-expressed protein 2-like.	Prostate and testis expressed C.	0.560
LOC103693040	Ly6g5b	ENSRNOP00000039556	ENSRNOP00000032293	Prostate and testis-expressed protein 2-like.	Lymphocyte antigen 6 complex locus protein G5b.	0.546
LOC103693040	Ly6g6g	ENSRNOP00000039556	ENSRNOP00000067977	Prostate and testis-expressed protein 2-like.	Lymphocyte antigen 6 complex, locus G6G.	0.560
LOC103693040	Pate2	ENSRNOP00000039556	ENSRNOP00000057193	Prostate and testis-expressed protein 2-like.	Prostate and testis-expressed 2.	0.558

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Textmining

Neighborhood

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About