STRINGSTRING
CCE97289.1 CCE97289.1 ku ku CCE96138.1 CCE96138.1 polA polA dnan1 dnan1 dnan3 dnan3 CCE97538.1 CCE97538.1 CCE95991.1 CCE95991.1 CCE95948.1 CCE95948.1 lebB lebB xthA2 xthA2
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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a 3D structure is known or predicted
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Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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CCE97289.1Putative ATP-dependent DNA ligase protein. (865 aa)    
Predicted Functional Partners:
ku
Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.988
CCE96138.1
DNA polymerase LigD, ligase domain protein.
 
  
0.951
polA
K02335 DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.888
dnan1
DNA polymerase III subunit beta.
   
 0.877
dnan3
DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.877
CCE97538.1
Putative DNA topoisomerase I, TopI.
 
 
 
 0.812
CCE95991.1
DNA polymerase III, delta prime subunit.
   
 0.766
CCE95948.1
Hypothetical protein.
 
    0.723
lebB
Signal peptidase I; Belongs to the peptidase S26 family.
    
 0.704
xthA2
Exodeoxyribonuclease III.
  
 
 0.686
Your Current Organism:
Sinorhizobium fredii HH103
NCBI taxonomy Id: 1117943
Other names: S. fredii HH103, Sinorhizobium fredii str. HH103, Sinorhizobium fredii strain HH103
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