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cspA cspA yaeQ yaeQ rplY rplY tufA tufA rpsU rpsU rpmJ rpmJ rpsE rpsE rpsL rpsL rplO rplO rplR rplR rpsT rpsT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspACold shock protein 7.4, transcriptional activator of hns; Binds to and stimulates the transcription of the CCAAT- containing, cold-shock-inducible promoters of the H-NS and GyrA proteins. Binds also to the inverted repeat 5'-ATTGG-3' (By similarity). (70 aa)    
Predicted Functional Partners:
yaeQ
Hypothetical protein; Residues 1 to 152 of 152 are 99.34 pct identical to residues 1 to 152 of 181 from Escherichia coli K-12 Strain MG1655: B0190.
  
    0.821
rplY
50S ribosomal subunit protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
   
   0.820
tufA
Protein chain elongation factor EF-Tu (duplicate of tufB); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.815
rpsU
30S ribosomal subunit protein S21; Residues 1 to 71 of 71 are 100.00 pct identical to residues 1 to 71 of 71 from Escherichia coli K-12 Strain MG1655: B3065; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.804
rpmJ
50S ribosomal subunit protein L36; Residues 1 to 38 of 38 are 100.00 pct identical to residues 1 to 38 of 38 from Escherichia coli K-12 Strain MG1655: B3299; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.799
rpsE
30S ribosomal subunit protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.796
rpsL
30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.795
rplO
50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.791
rplR
50S ribosomal subunit protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
   0.791
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.789
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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