STRINGSTRING
arp arp trpA trpA yjcF yjcF EspX6 EspX6 espY1 espY1 yqeK yqeK nleG6-1 nleG6-1 espY4 espY4 espX1 espX1 yjbI yjbI espR1 espR1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arpRegulator of acetyl CoA synthetase; Residues 1 to 728 of 728 are 96.84 pct identical to residues 1 to 728 of 728 from Escherichia coli K-12 Strain MG1655: B4017. (728 aa)    
Predicted Functional Partners:
trpA
Tryptophan synthase, alpha protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
      
 0.801
yjcF
Orf, hypothetical protein; Residues 1 to 430 of 430 are 96.04 pct identical to residues 1 to 430 of 430 from Escherichia coli K-12 Strain MG1655: B4066.
   
  
 0.720
EspX6
Hypothetical protein; Residues 386 to 599 of 731 are 28.03 pct identical to residues 79 to 268 of 295 from GenPept 118 : gi|886362|gb|AAA69501.1| (L42525) product unknown; 32 kd ORF [Plasmid pSW200].
   
  
 0.563
espY1
Hypothetical protein; Residues 1 to 192 of 250 are 87.50 pct identical to residues 1 to 192 of 216 from Escherichia coli K-12 Strain MG1655: B0056.
      
 0.554
yqeK
Orf, hypothetical protein; Residues 1 to 145 of 145 are 97.24 pct identical to residues 1 to 145 of 145 from Escherichia coli K-12 Strain MG1655: B2849.
   
    0.489
nleG6-1
Unknown protein encoded by prophage CP-933R; Residues 72 to 206 of 209 are 91.11 pct identical to residues 1 to 135 of 140 from GenPept 118 : gi|4126792|dbj|BAA36750.1| (AB016764) ORF4 [Escherichia coli].
      
 0.463
espY4
Hypothetical protein; Residues 81 to 768 of 802 are 21.26 pct identical to residues 1276 to 1894 of 1946 from GenPept 118 : gi|8052285|emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [Plasmodium falciparum].
      
 0.463
espX1
Hypothetical protein; No significant matches.
      
 0.461
yjbI
Hypothetical protein; Residues 86 to 526 of 526 are 88.66 pct identical to residues 2 to 442 of 442 from Escherichia coli K-12 Strain MG1655: B4038.
      
 0.461
espR1
Hypothetical protein; Residues 67 to 292 of 419 are 88.93 pct identical to residues 93 to 318 of 318 from Escherichia coli K-12 Strain MG1655: B1471.
      
 0.459
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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