STRINGSTRING
Daro_3850 Daro_3850 Daro_3849 Daro_3849 Daro_0440 Daro_0440 Daro_0925 Daro_0925 Daro_0438 Daro_0438 Daro_1602 Daro_1602 Daro_3852 Daro_3852 rph rph Daro_3359 Daro_3359 Daro_0436 Daro_0436 Daro_3848 Daro_3848
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
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[Homology]
Score
Daro_3850Protein phosphatase 2C-like protein. (306 aa)    
Predicted Functional Partners:
Daro_3849
Serine/threonine protein kinase.
 
 
 0.971
Daro_0440
Dihydrolipoamide dehydrogenase.
  
 0.908
Daro_0925
Cyclic nucleotide-binding:Protein kinase.
 
 0.852
Daro_0438
Protein kinase.
 
 
 0.842
Daro_1602
Protein kinase:GAF.
 
 
 0.833
Daro_3852
Ham1-like protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
   
   0.796
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.794
Daro_3359
Forkhead-associated.
 
 
 
 0.687
Daro_0436
Hypothetical protein.
 
 
 
 0.612
Daro_3848
Conserved hypothetical protein 255.
       0.607
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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