node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PF0060 | PF1580 | PF0060 | PF1580 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | 0.982 |
PF0060 | csl4 | PF0060 | PF0052 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.939 |
PF0060 | nep1 | PF0060 | PF1262 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.977 |
PF0060 | rps11 | PF0060 | PF1648 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.986 |
PF0060 | rps4 | PF0060 | PF1649 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.982 |
PF0060 | rps6e | PF0060 | PF0488 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Function Code: 13.4 Translation: Ribosomal proteins: synthesis and modification; (rps6E). | 0.996 |
PF0060 | rrp42 | PF0060 | PF1567 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.930 |
PF0060 | rtc | PF0060 | PF1549 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | RNA-3'-phosphate cyclase; Catalyzes the GTP-dependent conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing; Belongs to the RNA 3'-terminal cyclase family. Type 1 subfamily. | 0.958 |
PF0060 | tmcA | PF0060 | PF0504 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | DNA helicase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.993 |
PF1580 | PF0060 | PF1580 | PF0060 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | 0.982 |
PF1580 | csl4 | PF1580 | PF0052 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | Hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.951 |
PF1580 | nep1 | PF1580 | PF1262 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.999 |
PF1580 | rps11 | PF1580 | PF1648 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
PF1580 | rps4 | PF1580 | PF1649 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
PF1580 | rps6e | PF1580 | PF0488 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | Function Code: 13.4 Translation: Ribosomal proteins: synthesis and modification; (rps6E). | 0.999 |
PF1580 | rrp42 | PF1580 | PF1567 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | Hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.934 |
PF1580 | rtc | PF1580 | PF1549 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | RNA-3'-phosphate cyclase; Catalyzes the GTP-dependent conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing; Belongs to the RNA 3'-terminal cyclase family. Type 1 subfamily. | 0.921 |
PF1580 | tmcA | PF1580 | PF0504 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | DNA helicase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.961 |
csl4 | PF0060 | PF0052 | PF0060 | Hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | 0.939 |
csl4 | PF1580 | PF0052 | PF1580 | Hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | 0.951 |