STRINGSTRING
Mlg_1988 Mlg_1988 Mlg_1350 Mlg_1350 Mlg_0346 Mlg_0346 Mlg_1989 Mlg_1989 carB carB ribB ribB Mlg_0375 Mlg_0375 Mlg_1982 Mlg_1982 guaA guaA Mlg_0201 Mlg_0201 Mlg_2702 Mlg_2702
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Mlg_1988PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ade:Adeh_1455 pyridoxamine 5'-phosphate oxidase. (196 aa)    
Predicted Functional Partners:
Mlg_1350
Pyridoxine 5'-phosphate synthase; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; KEGG: noc:Noc_0795 pyridoxal phosphate biosynthetic protein PdxJ.
     
 0.931
Mlg_0346
KEGG: noc:Noc_0365 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain.
      0.793
Mlg_1989
Nodulation efficiency protein NfeD; PFAM: protein of unknown function DUF107; KEGG: nmu:Nmul_A1039 protein of unknown function DUF107.
       0.627
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: noc:Noc_2572 carbamoyl-phosphate synthase, large subunit, glutamine-dependent; Belongs to the CarB family.
 
 
  
 0.619
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.583
Mlg_0375
KEGG: dar:Daro_0605 riboflavin biosynthesis protein RibD:riboflavin-specific deaminase, C-terminal; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein.
      
 0.547
Mlg_1982
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: vch:VC2390 carbamoyl-phosphate synthase, small subunit.
 
      0.521
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
      
 0.505
Mlg_0201
KEGG: tbd:Tbd_2339 4-hydroxythreonine-4-phosphate dehydrogenase PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA.
  
   
 0.457
Mlg_2702
L-proline dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: xcb:XC_3907 PutA.
     
 0.455
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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