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alr alr murF murF ddlA ddlA ADM97694.1 ADM97694.1 dat dat ADM99713.1 ADM99713.1 ADM99712.1 ADM99712.1 dadA dadA yfbQ yfbQ Dda3937_04568 Dda3937_04568 dnaB dnaB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
alrAlanine racemase 1, PLP-binding, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (358 aa)    
Predicted Functional Partners:
murF
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.962
ddlA
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.956
ADM97694.1
D-alanine aminotransferase; Protein involved in catalytic activity, amino acid biosynthetic process and metabolic process.
    
 0.914
dat
D-alanine aminotransferase; Protein involved in catalytic activity, amino acid biosynthetic process and metabolic process.
    
 0.914
ADM99713.1
D-alanine-activating enzyme (DAE) (D-alanine-D-alanyl carrier protein ligase) (DCL); Protein involved in catalytic activity, AMP binding, metabolic process and teichoic acid biosynthetic process.
    
 0.905
ADM99712.1
D-alanine carrier protein DltC; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
    
  0.904
dadA
D-amino acid dehydrogenase; Oxidative deamination of D-amino acids.
  
  
 0.879
yfbQ
Predicted aminotransferase; Protein involved in catalytic activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, 1-aminocyclopropane-1-carboxylate synthase activity and biosynthetic process.
    
 0.821
Dda3937_04568
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Putative transcriptional regulator pseudogene containing internal frameshift, split into two open reading frames; Protein involved in (OBSOLETE) ATP-binding cassette (ABC) transporter activity.
    
  0.805
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
 
   
 0.762
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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