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ygjO ygjO yhhF yhhF ygjP ygjP hepA hepA higA higA c3841 c3841 ycbY ycbY ygjR ygjR ygjQ ygjQ ycgL ycgL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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ygjOPutative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. (378 aa)    
Predicted Functional Partners:
yhhF
Putative methylase yhhF; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family.
      
 0.682
ygjP
Hypothetical protein ygjP; Escherichia coli K-12 ortholog: b3085; Escherichia coli O157:H7 ortholog: z4438.
 
     0.652
hepA
RNA polymerase associated protein; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
  
    0.564
higA
Hypothetical protein ygjM; Antitoxin component of a type II toxin-antitoxin (TA) system. Functions as an mRNA interferase antitoxin.
       0.523
c3841
Hypothetical protein; Residues 32 to 56 of 56 are 100.00 pct identical to residues 80 to 104 of 104 from GenPept.129 : >gb|AAG58216.1|AE005538_3 (AE005538) orf, hypothetical protein [Escherichia coli O157:H7 EDL933].
       0.523
ycbY
Hypothetical protein ycbY; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
   
  
 0.469
ygjR
Hypothetical oxidoreductase ygjR; Escherichia coli K-12 ortholog: b3087; Escherichia coli O157:H7 ortholog: z4440.
 
     0.457
ygjQ
Hypothetical protein ygjQ; Escherichia coli K-12 ortholog: b3086; Escherichia coli O157:H7 ortholog: z4439.
       0.429
ycgL
Protein ycgL; Escherichia coli K-12 ortholog: b1179; Escherichia coli O157:H7 ortholog: z1941.
  
     0.415
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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