STRINGSTRING
Cthe_0696 Cthe_0696 Cthe_0370 Cthe_0370 mraZ mraZ Cthe_0695 Cthe_0695 rpsI rpsI rpsF rpsF Cthe_0980 Cthe_0980 rpsP rpsP speE speE rpsJ rpsJ rpsL rpsL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0696PFAM: rRNA methylase; KEGG: cce:Ccel_1741 putative rRNA methylase. (188 aa)    
Predicted Functional Partners:
Cthe_0370
TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: cce:Ccel_2203 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB.
    0.948
mraZ
KEGG: cce:Ccel_0475 MraZ protein; TIGRFAM: MraZ protein; PFAM: MraZ domain; Belongs to the MraZ family.
  
  
 0.803
Cthe_0695
Agmatinase; KEGG: dae:Dtox_3566 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
    0.774
rpsI
PFAM: ribosomal protein S9; KEGG: cce:Ccel_0795 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.701
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.690
Cthe_0980
KEGG: cce:Ccel_0477 cell division protein FtsL.
  
  
 0.684
rpsP
KEGG: cce:Ccel_0710 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.680
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
    0.676
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.627
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.608
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.