STRINGSTRING
Sde_0087 Sde_0087 Sde_2049 Sde_2049 Sde_3120 Sde_3120 cbm2E cbm2E Sde_2949 Sde_2949 Sde_1409 Sde_1409 Sde_1965 Sde_1965 Sde_1923 Sde_1923 Sde_2240 Sde_2240 Sde_2488 Sde_2488 Sde_3119 Sde_3119
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0087Pentapeptide repeat. (600 aa)    
Predicted Functional Partners:
Sde_2049
Cell surface receptor IPT/TIG.
  
     0.761
Sde_3120
ATP-binding region, ATPase-like protein.
  
 
 0.729
cbm2E
Putative cellulose-binding protein.
  
    0.719
Sde_2949
Hypothetical protein.
  
     0.617
Sde_1409
ATP-binding region, ATPase-like protein.
  
 
 0.614
Sde_1965
Conserved hypothetical protein.
  
     0.606
Sde_1923
Response regulator receiver.
  
 
 0.598
Sde_2240
ATP-binding region, ATPase-like protein.
  
 
 0.598
Sde_2488
ATP-binding region, ATPase-like protein.
  
 
 0.598
Sde_3119
ATP-binding region, ATPase-like protein.
  
 
 0.598
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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