Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sde_0830 | Sde_0885 | Sde_0830 | Sde_0885 | Catalase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.681 |
Sde_0830 | Sde_2811 | Sde_0830 | Sde_2811 | Catalase. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.548 |
Sde_0830 | katG | Sde_0830 | Sde_3888 | Catalase. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.929 |
Sde_0885 | Sde_0830 | Sde_0885 | Sde_0830 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Catalase. | 0.681 |
Sde_0885 | Sde_2811 | Sde_0885 | Sde_2811 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.465 |
Sde_0885 | argA | Sde_0885 | Sde_0360 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.411 |
Sde_0885 | katG | Sde_0885 | Sde_3888 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.640 |
Sde_0885 | trxA | Sde_0885 | Sde_3655 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Thioredoxin; The active site is a redox-active disulfide bond; Belongs to the thioredoxin family. | 0.548 |
Sde_1012 | Sde_1232 | Sde_1012 | Sde_1232 | Histidinol phosphate aminotransferase. | Aminotransferase. | 0.916 |
Sde_1012 | Sde_2147 | Sde_1012 | Sde_2147 | Histidinol phosphate aminotransferase. | Prephenate dehydratase. | 0.955 |
Sde_1012 | katG | Sde_1012 | Sde_3888 | Histidinol phosphate aminotransferase. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.903 |
Sde_1232 | Sde_1012 | Sde_1232 | Sde_1012 | Aminotransferase. | Histidinol phosphate aminotransferase. | 0.916 |
Sde_1232 | Sde_2147 | Sde_1232 | Sde_2147 | Aminotransferase. | Prephenate dehydratase. | 0.958 |
Sde_1232 | argA | Sde_1232 | Sde_0360 | Aminotransferase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.937 |
Sde_1232 | katG | Sde_1232 | Sde_3888 | Aminotransferase. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.907 |
Sde_2147 | Sde_1012 | Sde_2147 | Sde_1012 | Prephenate dehydratase. | Histidinol phosphate aminotransferase. | 0.955 |
Sde_2147 | Sde_1232 | Sde_2147 | Sde_1232 | Prephenate dehydratase. | Aminotransferase. | 0.958 |
Sde_2147 | argA | Sde_2147 | Sde_0360 | Prephenate dehydratase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.589 |
Sde_2147 | glnE | Sde_2147 | Sde_0389 | Prephenate dehydratase. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.435 |
Sde_2147 | katG | Sde_2147 | Sde_3888 | Prephenate dehydratase. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.800 |
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