node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BL0998 | hrdB | BL0998 | BL1428 | COG family: transcriptional regulators, similar to M. xanthus card; PFAM_ID: TF_CarD. | RNA polymerase principal sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.999 |
BL0998 | rbpA | BL0998 | BL0743 | COG family: transcriptional regulators, similar to M. xanthus card; PFAM_ID: TF_CarD. | Narrowly conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.999 |
BL0998 | rpoA | BL0998 | BL1606 | COG family: transcriptional regulators, similar to M. xanthus card; PFAM_ID: TF_CarD. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
BL0998 | rpoB | BL0998 | BL1205 | COG family: transcriptional regulators, similar to M. xanthus card; PFAM_ID: TF_CarD. | RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
BL0998 | rpoC | BL0998 | BL1204 | COG family: transcriptional regulators, similar to M. xanthus card; PFAM_ID: TF_CarD. | RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
BL0998 | rpoZ | BL0998 | BL1787 | COG family: transcriptional regulators, similar to M. xanthus card; PFAM_ID: TF_CarD. | Probable DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
BL1189 | BL1736 | BL1189 | BL1736 | Hypothetical protein. | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | 0.908 |
BL1189 | rpoA | BL1189 | BL1606 | Hypothetical protein. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.992 |
BL1189 | rpoB | BL1189 | BL1205 | Hypothetical protein. | RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.988 |
BL1189 | rpoC | BL1189 | BL1204 | Hypothetical protein. | RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
BL1189 | rpoZ | BL1189 | BL1787 | Hypothetical protein. | Probable DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.991 |
BL1736 | BL1189 | BL1736 | BL1189 | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | Hypothetical protein. | 0.908 |
BL1736 | gmk | BL1736 | BL0070 | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.584 |
BL1736 | rpoA | BL1736 | BL1606 | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.991 |
BL1736 | rpoB | BL1736 | BL1205 | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.993 |
BL1736 | rpoC | BL1736 | BL1204 | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.892 |
BL1736 | rpoZ | BL1736 | BL1787 | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | Probable DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.994 |
gmk | BL1736 | BL0070 | BL1736 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Possible helicase; COG family: superfamily II DNA/RNA helicases, Snf2 family; PFAM_ID: SNF2_N; PFAM_ID: helicase_C. | 0.584 |
gmk | rpoZ | BL0070 | BL1787 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Probable DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.971 |
greA | rpoA | BL1015 | BL1606 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.971 |