Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA3842 | exoS | PA3842 | PA3841 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.927 |
| PA3842 | exoY | PA3842 | PA2191 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Adenylate cyclase ExoY; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.822 |
| PA3842 | exsA | PA3842 | PA1713 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Transcriptional regulator ExsA; Appears to be required for induction of exoenzyme S synthesis above a low basal level. | 0.773 |
| PA3842 | exsC | PA3842 | PA1710 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ExsC, exoenzyme S synthesis protein C precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.735 |
| PA3842 | exsD | PA3842 | PA1714 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ExsD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.835 |
| PA3842 | pcrH | PA3842 | PA1707 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.897 |
| PA3842 | pcrV | PA3842 | PA1706 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Type III secretion protein PcrV; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.864 |
| PA3842 | popB | PA3842 | PA1708 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Translocator protein PopB; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.861 |
| PA3842 | popD | PA3842 | PA1709 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.860 |
| PA3842 | pscF | PA3842 | PA1719 | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Type III export protein PscF; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages. | 0.768 |
| exoS | PA3842 | PA3841 | PA3842 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.927 |
| exoS | exoY | PA3841 | PA2191 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Adenylate cyclase ExoY; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.959 |
| exoS | exsA | PA3841 | PA1713 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Transcriptional regulator ExsA; Appears to be required for induction of exoenzyme S synthesis above a low basal level. | 0.936 |
| exoS | exsC | PA3841 | PA1710 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | ExsC, exoenzyme S synthesis protein C precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.957 |
| exoS | exsD | PA3841 | PA1714 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | ExsD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.945 |
| exoS | pcrH | PA3841 | PA1707 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.941 |
| exoS | pcrV | PA3841 | PA1706 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Type III secretion protein PcrV; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.983 |
| exoS | popB | PA3841 | PA1708 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Translocator protein PopB; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.983 |
| exoS | popD | PA3841 | PA1709 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.983 |
| exoS | pscF | PA3841 | PA1719 | Exoenzyme S; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Type III export protein PscF; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages. | 0.925 |
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