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uxaC uxaC uxaB1 uxaB1 uxaB2 uxaB2 uxuA uxuA uxuB uxuB ECA0920 ECA0920 uxaA uxaA pehA pehA rspB rspB ECA3847 ECA3847 araD araD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
uxaCUronate isomerase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri uronate isomerase UxaC or b3092 or c3850 or sf3132 SWALL:UXAC_ECOLI (SWALL:P42607) (470 aa) fasta scores: E(): 8.6e-183, 89.33% id in 469 aa. (469 aa)    
Predicted Functional Partners:
uxaB1
Altronate oxidoreductase; Similar to Escherichia coli, and Escherichia coli O157:H7 altronate oxidoreductase UxaB or b1521 or z2184 or ecs2128 SWALL:UXAB_ECOLI (SWALL:P24214) (483 aa) fasta scores: E(): 2e-148, 72.54% id in 488 aa, and to Yersinia pestis altronate oxidoreductase UxaB SWALL:AAM87147 (EMBL:AJ414143) (483 aa) fasta scores: E(): 3e-163, 80.28% id in 487 aa. Also similar to ECA4383 (69.278% id. in 485 aa overlap); Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
 
 0.994
uxaB2
Altronate oxidoreductase; Similar to Escherichia coli, and Escherichia coli O157:H7 altronate oxidoreductase UxaB or b1521 or z2184 or ecs2128 SWALL:UXAB_ECOLI (SWALL:P24214) (483 aa) fasta scores: E(): 2.9e-146, 72.67% id in 483 aa. Also similar to ECA0646 (69.278% id. in 485 aa overlap).
 
 
 0.981
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.970
uxuB
Similar to Escherichia coli D-mannonate oxidoreductase UxuB or b4323 SWALL:UXUB_ECOLI (SWALL:P39160) (486 aa) fasta scores: E(): 4.5e-107, 56.03% id in 489 aa, and to Yersinia pestis putative D-mannonate oxidoreductase ypo1280 or y2903 SWALL:AAM86454 (EMBL:AJ414147) (490 aa) fasta scores: E(): 8.7e-128, 63.93% id in 488 aa. Also similar to ECA0920 (54.906% id. in 479 aa overlap); Belongs to the mannitol dehydrogenase family.
 
 
 0.956
ECA0920
Probable carbohydrate oxidoreductase; Similar to Escherichia coli D-mannonate oxidoreductase UxuB or b4323 SWALL:UXUB_ECOLI (SWALL:P39160) (486 aa) fasta scores: E(): 1.5e-102, 54.83% id in 476 aa, and to Escherichia coli hypothetical oxidoreductase ydfi or b1542 SWALL:YDFI_ECOLI (SWALL:P77260) (486 aa) fasta scores: E(): 1.2e-127, 65.26% id in 475 aa. Also similar to ECA0819 (UxuB) (54.906% id. in 479 aa overlap); Belongs to the mannitol dehydrogenase family.
 
 
 0.954
uxaA
Similar to Escherichia coli altronate hydrolase UxaA SWALL:UXAA_ECOLI (SWALL:P42604) (495 aa) fasta scores: E(): 4.1e-163, 80.24% id in 496 aa.
 
  
 0.940
pehA
Endo-polygalacturonase; Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.934
rspB
Putative starvation sensing zinc-binding dehydrogenase; Similar to Escherichia coli starvation sensing protein RspB or b1580 SWALL:RSPB_ECOLI (SWALL:P38105) (339 aa) fasta scores: E(): 5.6e-94, 73.45% id in 339 aa.
     
 0.907
ECA3847
Similar to Butyrivibrio fibrisolvens xylosidase/arabinosidase [includes: beta-xylosidase; alpha-L-arabinofuranosidase] xylB SWALL:XYLB_BUTFI (SWALL:P45982) (517 aa) fasta scores: E(): 4.4e-13, 25.19% id in 520 aa, and to Xanthomonas campestris xylosidase/arabinosidase xcc0149 SWALL:Q8PE34 (EMBL:AE012110) (526 aa) fasta scores: E(): 3.3e-128, 58.97% id in 507 aa; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.849
araD
Similar to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD or b0061 SWALL:ARAD_ECOLI (SWALL:P08203) (231 aa) fasta scores: E(): 5.3e-74, 77.48% id in 231 aa.
     
 0.818
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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